JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF229_chr19_44421254_44453472	0/0	c0003	2478	79	14	23	36	2	4	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0004	2478	59	0	2	53	2	2	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0005	2478	12	0	0	12	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0006	2478	4	0	2	0	1	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0007	2478	4	4	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0008	2478	4	4	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0009	2478	3	1	2	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0010	2478	3	3	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0011	2478	3	1	2	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0012	2478	2	0	0	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0013	2058	2	0	0	2	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0014	2478	2	2	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0015	2478	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0016	2478	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0017	2478	1	0	0	0	1	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0018	2478	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0019	2478	1	0	0	0	0	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0020	2478	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0021	2478	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0022	2478	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0023	2478	1	0	0	0	0	1	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0024	2478	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0025	2478	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0026	2478	1	1	0	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0027	2478	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0028	2478	1	0	1	0	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF229_chr19_44421254_44453472	0/0	c0029	2478	1	0	0	1	0	0	copy fasta	ZNF229	chr19	44421254	44453472
ZNF22_chr10_44995923_45010326	1/1	c0001	675	425	91	77	193	18	44	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	c0002	675	22	1	0	21	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	c0003	675	2	0	0	2	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF22_chr10_44995923_45010326	0/0	c0004	675	1	0	1	0	0	0	copy fasta	ZNF22	chr10	44995923	45010326
ZNF230_chr19_43997957_44018924	1/1	c0001	1425	307	59	52	141	11	42	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0002	1425	55	15	12	23	3	2	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0003	1425	39	0	11	26	0	2	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0004	1425	10	9	1	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0005	1425	4	4	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0006	1425	4	4	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0007	1425	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0008	1425	1	0	0	0	1	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0009	1425	1	0	0	0	1	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0010	1425	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0011	1425	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF230_chr19_43997957_44018924	0/0	c0013	1425	1	1	0	0	0	0	copy fasta	ZNF230	chr19	43997957	44018924
ZNF232_chr17_5100736_5116878	1/1	c0001	1335	424	88	78	201	16	39	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	c0002	1335	2	2	0	0	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	c0003	1335	1	0	0	1	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	c0004	1317	1	0	0	1	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	c0005	1335	1	0	0	1	0	0	copy fasta	ZNF232	chr17	5100736	5116878
ZNF232_chr17_5100736_5116878	0/0	c0006	1335	1	0	0	0	0	1	copy fasta	ZNF232	chr17	5100736	5116878