JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF239_chr10_43551344_43579616	0/0	c0014	1377	1	1	0	0	0	0	copy fasta	ZNF239	chr10	43551344	43579616
ZNF23_chr16_71442597_71467247	0/1	c0001	2061	180	69	26	53	6	25	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	1/0	c0002	2061	170	2	38	109	5	15	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0003	2061	25	1	5	8	4	7	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0004	2061	21	9	9	2	1	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0005	2061	11	11	0	0	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0006	2061	2	0	0	2	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0007	2061	2	0	0	2	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0008	2061	1	0	0	0	0	1	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0009	2061	1	0	0	1	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0010	2061	1	0	0	1	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0011	2061	1	0	0	1	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0012	2061	1	0	0	1	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0013	2061	1	1	0	0	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF23_chr16_71442597_71467247	0/0	c0014	2061	1	1	0	0	0	0	copy fasta	ZNF23	chr16	71442597	71467247
ZNF248_chr10_37823763_37862610	1/1	c0001	1740	388	93	69	175	12	37	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0002	1740	8	1	5	0	2	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0003	1740	2	2	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0004	1740	2	0	2	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0005	1740	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0006	1740	1	0	1	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0007	1740	1	0	0	0	0	1	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0008	1740	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0009	1740	1	0	0	1	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0010	1740	1	0	1	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0011	1740	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF248_chr10_37823763_37862610	0/0	c0012	1740	1	1	0	0	0	0	copy fasta	ZNF248	chr10	37823763	37862610
ZNF24_chr18_35327227_35349420	0/1	c0001	1107	276	81	60	85	13	36	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	1/0	c0002	1107	137	15	14	98	1	8	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	c0003	1107	2	0	0	2	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	c0004	1107	2	1	0	1	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF24_chr18_35327227_35349420	0/0	c0005	1107	1	1	0	0	0	0	copy fasta	ZNF24	chr18	35327227	35349420
ZNF250_chr8_144871955_144906453	0/1	c0001	1668	362	84	67	175	11	24	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	1/0	c0002	1668	21	8	6	0	3	3	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	c0003	1668	4	3	1	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	c0004	1668	3	0	0	3	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	c0005	1668	1	0	0	0	0	1	copy fasta	ZNF250	chr8	144871955	144906453
ZNF250_chr8_144871955_144906453	0/0	c0006	1668	1	1	0	0	0	0	copy fasta	ZNF250	chr8	144871955	144906453
ZNF251_chr8_144715909_144760531	0/1	c0001	2016	297	92	51	109	12	32	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0002	2016	79	0	7	69	0	3	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0003	2016	3	0	1	0	2	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0004	2016	3	0	2	0	0	1	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0005	2016	1	0	0	1	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0006	2016	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0007	2016	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0008	2016	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0009	2016	1	0	0	1	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0010	2016	1	0	1	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF251_chr8_144715909_144760531	0/0	c0011	2016	1	1	0	0	0	0	copy fasta	ZNF251	chr8	144715909	144760531
ZNF253_chr19_19860882_19899674	1/1	c0001	1500	152	17	46	50	13	24	copy fasta	ZNF253	chr19	19860882	19899674