JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF253_chr19_19860882_19899674	0/0	c0002	1500	104	34	8	49	2	11	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0003	1500	46	5	6	33	0	2	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0004	1500	35	25	5	3	1	1	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0005	1500	15	0	0	15	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0006	1500	7	0	0	7	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0007	1500	2	2	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0008	1500	2	2	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0009	1500	2	2	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0010	1500	1	1	0	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0011	1476	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0012	1500	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0013	1500	1	0	1	0	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF253_chr19_19860882_19899674	0/0	c0014	1510	1	0	0	1	0	0	copy fasta	ZNF253	chr19	19860882	19899674
ZNF254_chr19_24082187_24134968	1/0	c0001	1980	245	60	52	87	12	33	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0002	1980	56	14	10	23	1	8	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0003	1980	31	0	5	25	0	1	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0004	1980	8	5	3	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0005	1980	5	5	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0006	1980	3	0	0	3	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0007	1980	3	3	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0008	1980	3	0	0	3	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0009	1980	2	2	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0010	1980	2	0	0	2	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0011	1980	2	0	0	0	0	2	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0012	1980	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0013	1980	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0014	1980	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0015	1980	1	0	0	0	1	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0016	1980	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0017	1980	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0018	1980	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0019	1980	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0020	1980	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0021	1980	1	1	0	0	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF254_chr19_24082187_24134968	0/0	c0022	1980	1	0	0	1	0	0	copy fasta	ZNF254	chr19	24082187	24134968
ZNF256_chr19_57935833_57952706	0/1	c0001	1884	289	71	50	124	12	31	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0002	1884	110	15	23	61	2	9	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0003	1884	6	5	1	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	1/0	c0004	1884	6	0	2	3	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0005	1884	2	2	0	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0006	1884	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0007	1884	1	0	1	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0008	1864	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0009	1884	1	1	0	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0010	1884	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0011	1884	1	0	0	1	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF256_chr19_57935833_57952706	0/0	c0012	1884	1	0	1	0	0	0	copy fasta	ZNF256	chr19	57935833	57952706
ZNF257_chr19_22047484_22096480	1/1	c0001	1692	333	53	52	180	10	36	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0002	1692	17	16	1	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480
ZNF257_chr19_22047484_22096480	0/0	c0003	1692	10	10	0	0	0	0	copy fasta	ZNF257	chr19	22047484	22096480