JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF264_chr19_57186500_57227846	0/0	c0011	1884	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0012	1884	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0013	1884	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0014	1884	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0015	1884	1	0	0	0	1	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0016	1884	1	0	0	1	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF264_chr19_57186500_57227846	0/0	c0017	1884	1	1	0	0	0	0	copy fasta	ZNF264	chr19	57186500	57227846
ZNF266_chr19_9407429_9440573	0/1	c0001	1851	211	68	41	69	9	23	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	1/0	c0002	1851	168	27	30	82	9	19	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0003	1851	6	0	0	6	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0004	1851	5	4	0	0	0	1	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0005	1851	3	0	1	2	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0006	1851	2	0	0	0	0	2	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0007	1851	1	0	0	1	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0008	1851	1	0	0	1	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0009	1851	1	0	1	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0010	1851	1	1	0	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0011	1851	1	0	1	0	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0012	1851	1	0	0	0	0	1	copy fasta	ZNF266	chr19	9407429	9440573
ZNF266_chr19_9407429_9440573	0/0	c0013	1851	1	0	0	1	0	0	copy fasta	ZNF266	chr19	9407429	9440573
ZNF267_chr16_31868807_31922357	0/1	c0001	2232	165	35	33	80	8	8	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	1/0	c0002	2232	41	35	5	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	c0003	2232	5	5	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	c0004	2232	3	3	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	c0005	2232	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF267_chr16_31868807_31922357	0/0	c0006	2232	1	1	0	0	0	0	copy fasta	ZNF267	chr16	31868807	31922357
ZNF268_chr12_133176495_133219832	1/1	c0001	2844	125	29	23	53	5	13	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0002	2844	73	30	23	10	1	9	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0003	2844	55	2	20	23	2	8	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0004	2844	39	1	7	14	6	11	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0005	2844	10	10	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0006	2844	10	0	0	9	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0007	2844	6	6	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0008	2844	5	5	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0009	2844	4	0	3	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0010	2844	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0011	2844	2	2	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0012	2844	2	0	0	1	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0013	2844	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0014	2844	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0015	2844	1	0	0	0	1	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0016	2844	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0017	2844	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0018	2844	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0019	2844	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0020	2844	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0021	2844	1	0	0	1	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0022	2844	1	0	0	0	0	1	copy fasta	ZNF268	chr12	133176495	133219832
ZNF268_chr12_133176495_133219832	0/0	c0023	2844	1	1	0	0	0	0	copy fasta	ZNF268	chr12	133176495	133219832
ZNF26_chr12_132981367_133032102	0/1	c0001	1602	235	41	52	94	13	34	copy fasta	ZNF26	chr12	132981367	133032102