JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BRWD1_chr21_39180482_39318632	0/0	c0024	6810	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0025	6810	1	0	0	1	0	0	copy fasta	BRWD1	chr21	39180482	39318632
BRWD1_chr21_39180482_39318632	0/0	c0026	6810	1	0	0	0	0	1	copy fasta	BRWD1	chr21	39180482	39318632
BRWD3_chrX_80664503_80814877	0/0	c0001	5409	249	58	36	116	11	28	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	c0002	5409	5	0	1	3	0	1	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	1/0	c0003	5409	3	2	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	c0004	5409	2	2	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/1	c0005	5409	1	0	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	c0006	5409	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	c0007	5409	1	0	1	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	c0008	5409	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	c0009	5409	1	1	0	0	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BRWD3_chrX_80664503_80814877	0/0	c0010	5410	1	0	0	1	0	0	copy fasta	BRWD3	chrX	80664503	80814877
BSCL2_chr11_62685275_62712424	1/1	c0001	1389	250	58	38	117	10	25	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0002	1389	49	5	14	22	1	7	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0003	1389	22	19	3	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0004	1389	3	3	0	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0005	1389	1	0	0	1	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0006	1389	1	0	0	0	1	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0007	1389	1	0	1	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0008	1307	1	0	1	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0009	1389	1	0	1	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSCL2_chr11_62685275_62712424	0/0	c0010	1389	1	1	0	0	0	0	copy fasta	BSCL2	chr11	62685275	62712424
BSDC1_chr1_32359633_32399441	1/1	c0001	1293	168	82	34	30	6	14	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	c0002	1293	1	1	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSDC1_chr1_32359633_32399441	0/0	c0003	1293	1	1	0	0	0	0	copy fasta	BSDC1	chr1	32359633	32399441
BSG_chr19_567596_588493	1/1	c0001	1158	139	37	42	37	10	11	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0002	1158	88	16	16	41	1	14	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0003	1158	54	12	10	20	3	9	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0004	1158	3	3	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0005	1158	2	0	2	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0006	1158	2	0	1	0	1	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0007	1158	2	0	0	2	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0008	1158	2	0	1	0	1	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0009	1158	2	0	0	1	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0010	1158	2	2	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0011	1158	2	1	0	0	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0012	1158	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0013	1158	1	1	0	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0014	1158	1	0	1	0	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0015	1158	1	0	0	0	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0016	1158	1	0	0	0	0	1	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0017	1158	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0018	1158	1	0	0	1	0	0	copy fasta	BSG	chr19	567596	588493
BSG_chr19_567596_588493	0/0	c0019	1158	1	0	1	0	0	0	copy fasta	BSG	chr19	567596	588493
BSND_chr1_54993933_55022172	1/1	c0001	963	368	67	64	176	13	46	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	c0002	963	49	13	2	34	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	c0003	963	24	14	7	0	3	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	c0004	963	2	2	0	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	c0005	963	2	0	0	2	0	0	copy fasta	BSND	chr1	54993933	55022172