JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF276_chr16_89716537_89745925	0/0	c0004	1845	22	0	0	20	1	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0005	1845	11	0	1	7	0	3	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0006	1845	9	8	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0007	1845	8	2	0	4	0	2	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0008	1845	5	0	0	5	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0009	1845	4	0	0	4	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0010	1845	4	0	0	3	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0011	1845	3	0	0	3	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0012	1845	2	2	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0013	1845	2	2	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0014	1845	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0015	1845	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0016	1845	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0017	1845	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0018	1845	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0019	1845	1	0	0	0	1	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0020	1845	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0021	1845	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0022	1845	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0023	1845	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0024	1845	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0025	1845	1	0	0	0	0	1	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0026	1845	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0027	1845	1	1	0	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0028	1845	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0029	1845	1	0	1	0	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF276_chr16_89716537_89745925	0/0	c0030	1845	1	0	0	1	0	0	copy fasta	ZNF276	chr16	89716537	89745925
ZNF277_chr7_112201695_112348934	1/1	c0001	1353	262	67	61	89	6	37	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	c0002	1353	11	8	1	1	0	1	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	c0003	1353	2	2	0	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	c0004	1353	2	1	1	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	c0005	1353	1	1	0	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	c0006	1353	1	1	0	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF277_chr7_112201695_112348934	0/0	c0007	1353	1	0	1	0	0	0	copy fasta	ZNF277	chr7	112201695	112348934
ZNF280A_chr22_22508736_22525270	0/1	c0001	1629	187	21	47	84	10	24	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0002	1629	149	30	17	84	5	13	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0003	1629	40	28	2	10	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0004	1629	10	0	0	10	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0005	1629	8	0	0	0	0	8	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0006	1629	7	6	1	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0007	1629	6	0	0	6	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0008	1629	5	1	3	0	1	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0009	1629	5	0	0	5	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0010	1629	3	2	1	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0011	1629	1	0	1	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0012	1629	1	1	0	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0013	1629	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0014	1652	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0015	1629	1	0	0	1	0	0	copy fasta	ZNF280A	chr22	22508736	22525270
ZNF280A_chr22_22508736_22525270	0/0	c0016	1629	1	1	0	0	0	0	copy fasta	ZNF280A	chr22	22508736	22525270