JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF282_chr7_149190546_149231238	0/0	c0010	2016	1	0	1	0	0	0	copy fasta	ZNF282	chr7	149190546	149231238
ZNF283_chr19_43822321_43857017	0/1	c0001	2034	122	28	13	56	6	18	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	1/0	c0002	2040	93	5	25	53	4	5	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0003	2040	50	16	8	20	2	4	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0004	2040	49	15	13	14	1	6	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0005	2040	36	0	4	31	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0006	2040	20	10	7	0	2	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0007	2034	12	12	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0008	2040	4	4	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0009	2034	3	2	1	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0010	2040	2	0	2	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0011	2034	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0012	2040	1	0	0	0	0	1	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0013	2040	1	0	1	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0014	2040	1	0	0	0	1	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF283_chr19_43822321_43857017	0/0	c0015	2040	1	1	0	0	0	0	copy fasta	ZNF283	chr19	43822321	43857017
ZNF284_chr19_44067159_44094613	0/0	c0001	1782	163	57	32	63	3	8	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/1	c0002	1779	135	19	22	64	9	20	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	1/0	c0003	1782	115	15	19	64	5	11	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0004	1779	17	4	0	13	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0005	1779	4	0	0	2	0	2	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0006	1782	4	3	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0007	1782	2	0	0	2	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0008	1782	2	1	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0009	1779	1	0	0	0	0	1	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0010	1779	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0011	1779	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0012	1779	1	0	0	0	1	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0013	1782	1	1	0	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0014	1782	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0015	1782	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0016	1782	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0017	1782	1	0	1	0	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF284_chr19_44067159_44094613	0/0	c0018	1782	1	0	0	1	0	0	copy fasta	ZNF284	chr19	44067159	44094613
ZNF285_chr19_44377298_44406608	1/0	c0001	1773	106	9	30	36	10	20	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/1	c0002	1773	95	22	16	44	4	8	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0003	1773	62	7	20	34	0	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0004	1773	59	2	2	49	2	4	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0005	1773	40	6	1	31	1	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0006	1773	11	11	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0007	1773	9	4	4	0	0	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0008	1773	9	6	3	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0009	1773	7	3	0	4	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0010	1773	5	0	0	2	0	3	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0011	1773	5	5	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0012	1773	3	3	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0013	1773	3	3	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0014	1773	3	0	0	3	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0015	1773	3	0	0	0	0	3	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0016	1773	3	0	2	0	0	1	copy fasta	ZNF285	chr19	44377298	44406608