JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF285_chr19_44377298_44406608	0/0	c0017	1773	3	3	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0018	1773	2	2	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0019	1773	2	2	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0020	1773	2	0	0	0	1	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0021	1773	2	0	0	2	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0022	1773	2	2	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0023	1773	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0024	1773	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0025	1773	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0026	1773	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0027	1773	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0028	1773	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0029	1773	1	0	0	0	0	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0030	1773	1	0	0	0	0	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0031	1773	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0032	1773	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0033	1773	1	0	0	1	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0034	1773	1	0	1	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0035	1773	1	0	1	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0036	1773	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0037	1773	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0038	1773	1	0	0	0	0	1	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0039	1773	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF285_chr19_44377298_44406608	0/0	c0040	1773	1	1	0	0	0	0	copy fasta	ZNF285	chr19	44377298	44406608
ZNF286A_chr17_15694752_15725787	0/0	c0001	1566	185	47	29	85	8	16	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/1	c0002	1566	111	23	34	31	5	17	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	1/0	c0003	1566	94	9	17	56	5	6	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0004	1566	29	0	1	24	0	4	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0005	1566	12	12	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0006	1566	3	0	0	3	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0007	1566	2	1	0	0	0	1	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0008	1566	2	2	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0009	1566	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0010	1566	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0011	1566	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0012	1566	1	0	0	1	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0013	1566	1	1	0	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF286A_chr17_15694752_15725787	0/0	c0014	1566	1	0	1	0	0	0	copy fasta	ZNF286A	chr17	15694752	15725787
ZNF287_chr17_16541954_16574204	1/1	c0001	2286	216	52	46	78	13	25	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	c0002	2286	39	35	3	0	1	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	c0003	2286	3	3	0	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	c0004	2286	2	0	0	2	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	c0005	2286	1	0	1	0	0	0	copy fasta	ZNF287	chr17	16541954	16574204
ZNF287_chr17_16541954_16574204	0/0	c0006	2286	1	0	0	0	0	1	copy fasta	ZNF287	chr17	16541954	16574204
ZNF28_chr19_52792408_52826633	0/1	c0001	2157	106	26	30	29	7	13	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0002	2157	96	0	5	81	2	8	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0003	2157	61	25	8	17	5	6	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0004	2157	56	15	9	18	0	14	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	1/0	c0005	2157	42	2	16	15	2	6	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0006	2155	11	0	0	10	0	1	copy fasta	ZNF28	chr19	52792408	52826633