JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF28_chr19_52792408_52826633	0/0	c0007	2157	10	7	3	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0008	2157	9	0	0	9	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0009	2157	6	5	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0010	2157	5	5	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0011	2157	3	3	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0012	2157	3	2	1	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0013	2157	2	2	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0014	2157	2	0	1	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0015	2157	2	0	0	0	2	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0016	2157	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0017	2157	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0018	2157	1	1	0	0	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0019	2157	1	0	0	0	0	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0020	2157	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0021	2157	1	0	0	0	0	1	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0022	2155	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF28_chr19_52792408_52826633	0/0	c0023	2157	1	0	0	1	0	0	copy fasta	ZNF28	chr19	52792408	52826633
ZNF292_chr6_87150565_87270943	1/0	c0001	8172	105	17	19	46	5	17	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0002	8172	89	3	20	49	7	10	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0003	8172	58	10	15	22	3	8	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/1	c0004	8172	32	4	5	19	1	2	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0005	8172	16	12	3	0	0	1	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0006	8172	13	12	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0007	8172	9	9	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0008	8172	4	4	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0009	8172	4	0	0	4	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0010	8172	3	3	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0011	8172	2	0	0	0	0	2	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0012	8172	2	2	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0013	8172	2	1	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0014	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0015	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0016	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0017	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0018	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0019	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0020	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0021	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0022	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0023	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0024	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0025	8172	1	0	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0026	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0027	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0028	8172	1	0	1	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0029	8172	1	1	0	0	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0030	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0031	8172	1	0	0	0	0	1	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0032	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943
ZNF292_chr6_87150565_87270943	0/0	c0033	8172	1	0	0	1	0	0	copy fasta	ZNF292	chr6	87150565	87270943