JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF304_chr19_57346271_57364898	1/0	c0004	1980	9	0	0	8	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0005	1980	5	5	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0006	1980	3	0	2	0	0	1	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0007	1980	3	3	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0008	1980	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0009	1980	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0010	1980	2	2	0	0	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0011	1980	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0012	1980	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0013	1980	1	0	0	0	1	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0014	1980	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF304_chr19_57346271_57364898	0/0	c0015	1980	1	0	0	1	0	0	copy fasta	ZNF304	chr19	57346271	57364898
ZNF30_chr19_34921903_34950168	1/1	c0001	1872	125	7	34	62	5	15	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0002	1872	93	10	10	64	4	5	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0003	1872	63	18	11	28	2	4	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0004	1872	35	20	2	6	0	7	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0005	1872	22	2	9	5	1	5	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0006	1872	16	16	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0007	1872	12	1	5	5	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0008	1872	6	5	0	0	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0009	1872	6	0	4	1	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0010	1872	5	5	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0011	1872	4	2	0	2	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0012	1872	4	3	1	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0013	1872	3	3	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0014	1872	3	0	2	0	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0015	1872	2	0	0	2	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0016	1872	2	2	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0017	1872	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0018	1776	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0019	1872	1	1	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0020	1872	1	0	0	0	1	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0021	1872	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0022	1872	1	0	0	0	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0023	1872	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0024	1872	1	0	0	0	0	1	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0025	1872	1	0	0	0	1	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0026	1872	1	0	0	1	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF30_chr19_34921903_34950168	0/0	c0027	1872	1	1	0	0	0	0	copy fasta	ZNF30	chr19	34921903	34950168
ZNF311_chr6_28989788_29010315	0/1	c0001	2001	233	71	36	97	7	21	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0002	2001	127	2	32	68	9	16	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0003	2001	39	6	6	23	2	2	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0004	2001	9	9	0	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0005	2001	2	0	0	2	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0006	2001	2	2	0	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0007	2001	1	0	1	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0008	2001	1	0	0	1	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0009	2001	1	0	1	0	0	0	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0010	2001	1	0	0	0	0	1	copy fasta	ZNF311	chr6	28989788	29010315
ZNF311_chr6_28989788_29010315	0/0	c0011	2001	1	0	0	1	0	0	copy fasta	ZNF311	chr6	28989788	29010315