JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF316_chr7_6632318_6663279	0/0	c0001	3015	140	13	18	85	2	22	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0002	3015	64	25	5	30	0	4	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	1/0	c0003	3015	40	3	20	8	4	4	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/1	c0004	3015	38	14	9	2	6	6	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0005	3015	30	25	4	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0006	3015	27	0	1	24	0	2	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0007	3015	18	0	2	16	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0008	3015	6	1	5	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0009	3015	6	0	0	6	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0010	3015	6	1	2	0	3	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0011	3015	5	1	1	0	2	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0012	3015	3	2	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0013	3016	2	0	0	2	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0014	3016	2	0	0	1	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0015	3016	2	0	0	2	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0016	3015	2	2	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0017	3015	2	0	0	0	0	2	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0018	3016	2	0	1	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0019	3016	2	1	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0020	3015	2	1	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0021	3015	2	2	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0022	3015	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0023	3016	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0024	3016	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0025	3015	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0026	3016	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0027	3015	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0028	3015	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0029	3035	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0030	3015	1	0	0	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0031	3015	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0032	3015	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0033	3015	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0034	3015	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0035	3015	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0036	3015	1	0	0	0	1	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0037	3015	1	0	0	1	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0038	3015	1	0	1	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0039	3016	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0040	3015	1	1	0	0	0	0	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0041	3063	1	0	0	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF316_chr7_6632318_6663279	0/0	c0042	3015	1	0	0	0	0	1	copy fasta	ZNF316	chr7	6632318	6663279
ZNF317_chr19_9135397_9168413	1/0	c0001	1788	276	73	51	110	12	29	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0002	1788	65	7	18	32	1	7	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0003	1788	33	6	6	17	3	1	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0004	1788	6	6	0	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0005	1788	3	0	3	0	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/1	c0006	1788	3	0	0	0	0	2	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0007	1788	2	0	0	2	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0008	1788	2	0	0	0	0	2	copy fasta	ZNF317	chr19	9135397	9168413