JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF317_chr19_9135397_9168413	0/0	c0009	1788	1	0	0	1	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0010	1788	1	0	0	0	0	1	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0011	1788	1	0	0	1	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF317_chr19_9135397_9168413	0/0	c0012	1788	1	0	0	1	0	0	copy fasta	ZNF317	chr19	9135397	9168413
ZNF318_chr6_43331070_43374647	0/1	c0001	6840	208	33	36	108	6	24	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0002	6840	52	25	15	9	2	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	1/0	c0003	6840	9	8	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0004	6840	5	5	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0005	6840	4	1	0	0	1	2	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0006	6840	4	4	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0007	6840	3	2	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0008	6840	3	2	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0009	6840	3	2	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0010	6840	2	0	0	2	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0011	6840	2	2	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0012	6840	2	0	0	2	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0013	6840	2	2	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0014	6840	2	2	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0015	6840	1	0	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0016	6840	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0017	6840	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0018	6840	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0019	6840	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0020	6840	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0021	6840	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0022	6840	1	0	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0023	6840	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0024	6840	1	0	1	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0025	6840	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0026	6840	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0027	6840	1	0	0	0	0	1	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0028	6840	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0029	6840	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0030	6840	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0031	6840	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0032	6840	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0033	6840	1	1	0	0	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0034	6840	1	0	0	0	1	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF318_chr6_43331070_43374647	0/0	c0035	6840	1	0	0	1	0	0	copy fasta	ZNF318	chr6	43331070	43374647
ZNF319_chr16_57989676_58005672	0/1	c0001	1749	245	80	29	96	11	28	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	1/0	c0002	1749	125	11	28	70	2	13	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0003	1749	8	0	0	7	0	1	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0004	1749	8	1	6	0	1	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0005	1749	4	0	0	4	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0006	1749	3	0	0	3	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0007	1749	2	0	0	2	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0008	1749	2	2	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0009	1749	2	1	1	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0010	1749	1	0	0	1	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF319_chr16_57989676_58005672	0/0	c0011	1749	1	1	0	0	0	0	copy fasta	ZNF319	chr16	57989676	58005672