JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BSND_chr1_54993933_55022172	0/0	c0006	963	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	c0007	952	1	0	0	1	0	0	copy fasta	BSND	chr1	54993933	55022172
BSND_chr1_54993933_55022172	0/0	c0008	963	1	0	1	0	0	0	copy fasta	BSND	chr1	54993933	55022172
BSN_chr3_49549477_49676549	0/1	c0001	11781	66	23	16	13	3	10	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0002	11781	41	11	12	6	6	6	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0003	11781	15	14	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	1/0	c0004	11781	14	6	3	0	3	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0005	11781	4	0	0	4	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0006	11781	4	1	2	0	1	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0007	11781	3	3	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0008	11781	2	0	2	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0009	11781	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0010	11781	2	0	0	2	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0011	11781	2	0	0	1	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0012	11781	2	0	2	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0013	11781	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0014	11781	2	0	2	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0015	11781	2	2	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0016	11781	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0017	11781	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0018	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0019	11781	1	0	0	0	1	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0020	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0021	11781	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0022	11781	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0023	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0024	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0025	11781	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0026	11781	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0027	11781	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0028	11781	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0029	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0030	11781	1	0	0	0	1	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0031	11781	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0032	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0033	11781	1	0	1	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0034	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0035	11781	1	0	0	1	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0036	11781	1	0	0	0	1	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0037	11781	1	1	0	0	0	0	copy fasta	BSN	chr3	49549477	49676549
BSN_chr3_49549477_49676549	0/0	c0038	11781	1	0	0	0	0	1	copy fasta	BSN	chr3	49549477	49676549
BSPH1_chr19_47963046_47997170	1/1	c0001	399	345	71	59	169	11	33	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	c0002	399	60	4	6	37	3	10	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	c0003	399	31	14	12	0	2	3	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	c0004	399	4	2	2	0	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	c0005	399	3	3	0	0	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPH1_chr19_47963046_47997170	0/0	c0006	399	1	0	1	0	0	0	copy fasta	BSPH1	chr19	47963046	47997170
BSPRY_chr9_113344541_113376222	1/1	c0001	1209	185	39	48	72	11	13	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0002	1209	151	44	15	79	3	10	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0003	1209	46	0	6	26	3	11	copy fasta	BSPRY	chr9	113344541	113376222