JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF319_chr16_57989676_58005672	0/0	c0012	1749	1	0	0	1	0	0	copy fasta	ZNF319	chr16	57989676	58005672
ZNF320_chr19_52871180_52902635	1/0	c0001	1530	183	23	29	108	2	20	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0002	1530	102	17	15	54	6	10	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0003	1530	99	28	28	25	5	13	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0004	1530	25	12	2	7	2	2	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0005	1530	11	9	2	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0006	1530	6	6	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0007	1530	3	0	0	3	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0008	1530	3	3	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0009	1530	1	0	0	0	0	1	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0010	1530	1	1	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0011	1530	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0012	1530	1	0	1	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0013	1530	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0014	1530	1	0	0	0	1	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0015	1530	1	0	1	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/1	c0016	1530	1	0	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0017	1530	1	1	0	0	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF320_chr19_52871180_52902635	0/0	c0018	1530	1	0	0	1	0	0	copy fasta	ZNF320	chr19	52871180	52902635
ZNF322_chr6_26629383_26664746	0/0	c0001	1209	283	64	46	134	12	27	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	c0002	1209	70	22	4	35	1	8	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	c0003	1209	8	7	1	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	c0004	1209	6	0	5	0	1	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	c0005	1209	1	0	0	1	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	c0006	1209	1	0	0	0	0	1	copy fasta	ZNF322	chr6	26629383	26664746
ZNF322_chr6_26629383_26664746	0/0	c0007	1209	1	1	0	0	0	0	copy fasta	ZNF322	chr6	26629383	26664746
ZNF324B_chr19_58446622_58462833	1/1	c0001	1635	349	82	69	146	9	41	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0002	1635	62	0	9	42	6	5	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0003	1635	10	10	0	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0004	1635	5	0	0	5	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0005	1635	2	0	0	0	1	1	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0006	1635	2	0	0	0	2	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0007	1635	2	0	1	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0008	1635	2	2	0	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0009	1635	1	0	0	0	0	1	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0010	1635	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0011	1635	1	0	1	0	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324B_chr19_58446622_58462833	0/0	c0012	1635	1	0	0	1	0	0	copy fasta	ZNF324B	chr19	58446622	58462833
ZNF324_chr19_58462080_58480436	0/1	c0001	1662	382	53	77	195	18	38	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0002	1662	13	11	1	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0003	1662	11	11	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0004	1662	9	9	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0005	1662	3	3	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0006	1662	3	0	2	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0007	1662	2	2	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	1/0	c0008	1662	2	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0009	1662	2	1	1	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0010	1662	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0011	1662	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0012	1662	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436