JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF324_chr19_58462080_58480436	0/0	c0013	1662	1	0	0	0	0	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0014	1662	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0015	1662	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0016	1662	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0017	1662	1	1	0	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0018	1662	1	0	0	0	0	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0019	1662	1	0	0	1	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0020	1662	1	0	0	0	0	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0021	1662	1	0	0	0	0	1	copy fasta	ZNF324	chr19	58462080	58480436
ZNF324_chr19_58462080_58480436	0/0	c0022	1662	1	0	1	0	0	0	copy fasta	ZNF324	chr19	58462080	58480436
ZNF326_chr1_89990110_90040533	0/0	c0001	1749	122	35	30	35	6	16	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	1/1	c0002	1749	84	25	18	18	7	14	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0003	1749	21	20	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0004	1749	1	0	0	0	0	1	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0005	1749	1	0	1	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0006	1749	1	0	1	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0007	1749	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0008	1749	1	0	0	1	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0009	1749	1	0	0	0	1	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF326_chr1_89990110_90040533	0/0	c0010	1749	1	1	0	0	0	0	copy fasta	ZNF326	chr1	89990110	90040533
ZNF329_chr19_58121248_58155789	1/1	c0001	1626	404	85	67	186	18	46	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0002	1626	6	5	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0003	1626	3	3	0	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0004	1626	3	0	1	0	0	2	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0005	1626	2	2	0	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0006	1626	1	1	0	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0007	1626	1	0	0	0	0	1	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0008	1626	1	0	0	0	0	1	copy fasta	ZNF329	chr19	58121248	58155789
ZNF329_chr19_58121248_58155789	0/0	c0009	1626	1	0	1	0	0	0	copy fasta	ZNF329	chr19	58121248	58155789
ZNF32_chr10_43638862_43653881	1/1	c0001	822	431	87	71	212	18	41	copy fasta	ZNF32	chr10	43638862	43653881
ZNF32_chr10_43638862_43653881	0/0	c0002	822	4	3	1	0	0	0	copy fasta	ZNF32	chr10	43638862	43653881
ZNF32_chr10_43638862_43653881	0/0	c0003	822	2	2	0	0	0	0	copy fasta	ZNF32	chr10	43638862	43653881
ZNF32_chr10_43638862_43653881	0/0	c0004	822	1	0	0	0	0	1	copy fasta	ZNF32	chr10	43638862	43653881
ZNF330_chr4_141215895_141239697	1/1	c0001	963	337	79	60	146	16	34	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	c0002	963	10	9	1	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	c0003	963	1	1	0	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	c0004	963	1	1	0	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF330_chr4_141215895_141239697	0/0	c0005	963	1	0	1	0	0	0	copy fasta	ZNF330	chr4	141215895	141239697
ZNF331_chr19_53533145_53585269	0/1	c0001	1392	242	46	39	124	10	22	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	1/0	c0002	1392	100	7	23	50	5	14	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0003	1392	28	23	5	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0004	1392	22	0	2	12	1	7	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0005	1392	8	8	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0006	1392	6	5	1	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0007	1392	4	4	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0008	1392	2	2	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0009	1392	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0010	1392	1	0	0	0	0	1	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0011	1392	1	0	0	1	0	0	copy fasta	ZNF331	chr19	53533145	53585269
ZNF331_chr19_53533145_53585269	0/0	c0012	1392	1	1	0	0	0	0	copy fasta	ZNF331	chr19	53533145	53585269