JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF335_chr20_45943660_45977203	0/0	c0011	4029	3	1	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0012	4029	2	0	0	2	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0013	4029	2	0	0	2	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0014	4029	2	2	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0015	4029	2	0	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0016	4029	2	2	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0017	4029	2	0	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0018	4029	2	0	0	0	0	2	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0019	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0020	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0021	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0022	4029	1	0	0	0	1	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0023	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0024	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0025	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0026	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0027	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0028	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0029	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0030	4029	1	0	1	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0031	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0032	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0033	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0034	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0035	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0036	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0037	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0038	4029	1	0	0	0	0	1	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0039	4029	1	0	0	0	0	1	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0040	4029	1	0	0	0	0	1	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0041	4029	1	0	1	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0042	4029	1	0	1	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0043	4029	1	0	0	1	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0044	4029	1	0	1	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF335_chr20_45943660_45977203	0/0	c0045	4029	1	1	0	0	0	0	copy fasta	ZNF335	chr20	45943660	45977203
ZNF337_chr20_25668195_25701853	1/0	c0001	2256	253	31	53	125	11	32	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0002	2256	73	39	7	23	1	3	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/1	c0003	2256	24	15	6	0	2	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0004	2256	2	2	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0005	2256	2	2	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0006	2256	2	0	0	2	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0007	2256	1	0	1	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0008	2256	1	1	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0009	2256	1	1	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0010	2256	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0011	2256	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0012	2256	1	0	1	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0013	2256	1	0	0	0	0	1	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0014	2256	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF337_chr20_25668195_25701853	0/0	c0015	2256	1	1	0	0	0	0	copy fasta	ZNF337	chr20	25668195	25701853