JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF337_chr20_25668195_25701853	0/0	c0016	2256	1	0	0	1	0	0	copy fasta	ZNF337	chr20	25668195	25701853
ZNF33A_chr10_38005675_38065087	0/0	c0001	2436	176	40	33	91	8	4	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	1/1	c0002	2436	157	35	33	66	2	19	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0003	2436	15	0	0	11	0	4	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0004	2436	8	1	5	0	2	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0005	2436	6	5	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0006	2436	4	3	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0007	2436	2	0	0	0	0	2	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0008	2436	2	0	0	0	0	2	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0009	2436	1	0	0	0	0	1	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0010	2436	1	0	1	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0011	2436	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0012	2436	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0013	2436	1	0	0	1	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33A_chr10_38005675_38065087	0/0	c0014	2436	1	1	0	0	0	0	copy fasta	ZNF33A	chr10	38005675	38065087
ZNF33B_chr10_42584109_42643570	0/1	c0001	2337	183	11	28	110	11	22	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	1/0	c0002	2337	94	29	24	26	0	14	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0003	2337	35	7	11	11	4	2	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0004	2337	26	8	0	17	0	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0005	2337	21	18	3	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0006	2337	7	7	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0007	2337	5	5	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0008	2337	3	0	3	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0009	2337	2	2	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0010	2337	1	0	0	1	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0011	2337	1	1	0	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0012	2337	1	0	0	0	1	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0013	2421	1	0	0	1	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0014	2337	1	0	1	0	0	0	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF33B_chr10_42584109_42643570	0/0	c0015	2337	1	0	0	0	0	1	copy fasta	ZNF33B	chr10	42584109	42643570
ZNF341_chr20_33726996_33797269	0/1	c0001	2565	248	67	44	103	10	23	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	1/0	c0002	2565	36	1	10	8	2	14	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0003	2565	22	21	1	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0004	2565	7	0	1	6	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0005	2565	3	0	0	3	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0006	2565	3	0	0	1	1	1	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0007	2565	3	1	0	0	2	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0008	2565	2	0	2	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0009	2565	2	0	0	2	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0010	2565	1	0	0	0	1	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0011	2565	1	0	0	0	0	1	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0012	2565	1	0	0	1	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0013	2565	1	1	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0014	2565	1	1	0	0	0	0	copy fasta	ZNF341	chr20	33726996	33797269
ZNF341_chr20_33726996_33797269	0/0	c0015	2565	1	0	0	0	0	1	copy fasta	ZNF341	chr20	33726996	33797269
ZNF343_chr20_2476817_2513915	1/1	c0001	1800	372	81	59	178	14	38	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0002	1800	14	13	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0003	1800	6	0	0	0	2	4	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0004	1800	3	0	3	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0005	1800	3	0	0	3	0	0	copy fasta	ZNF343	chr20	2476817	2513915