JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF343_chr20_2476817_2513915	0/0	c0006	1800	2	2	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0007	1800	1	0	0	0	0	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0008	1800	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0009	1800	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0010	1800	1	0	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0011	1884	1	0	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0012	1800	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0013	1800	1	0	0	0	0	1	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0014	1800	1	0	1	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0015	1800	1	1	0	0	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF343_chr20_2476817_2513915	0/0	c0016	1800	1	0	0	1	0	0	copy fasta	ZNF343	chr20	2476817	2513915
ZNF345_chr19_36845876_36884575	1/0	c0001	1467	340	83	69	139	9	39	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0002	1467	20	0	0	20	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0003	1467	7	7	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0004	1467	4	0	3	0	1	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0005	1467	1	1	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/1	c0006	1467	1	0	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0007	1467	1	0	1	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0008	1467	1	1	0	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0009	1467	1	0	0	1	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0010	1467	1	0	0	0	0	1	copy fasta	ZNF345	chr19	36845876	36884575
ZNF345_chr19_36845876_36884575	0/0	c0011	1467	1	0	1	0	0	0	copy fasta	ZNF345	chr19	36845876	36884575
ZNF346_chr5_177017696_177072985	1/1	c0001	885	350	86	66	148	12	36	copy fasta	ZNF346	chr5	177017696	177072985
ZNF347_chr19_53129935_53164053	0/1	c0001	2520	211	31	40	104	7	28	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	1/0	c0002	2520	105	30	23	38	4	9	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0003	2520	13	6	6	0	1	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0004	2520	7	6	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0005	2520	7	7	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0006	2520	3	0	0	3	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0007	2520	3	3	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0008	2520	2	2	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0009	2520	2	0	0	2	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0010	2520	2	2	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0011	2520	1	0	0	0	0	1	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0012	2520	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0013	2520	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0014	2520	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0015	2520	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0016	2520	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0017	2520	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0018	2520	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0019	2520	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0020	2520	1	0	1	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0021	2520	1	1	0	0	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0022	2520	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF347_chr19_53129935_53164053	0/0	c0023	2520	1	0	0	1	0	0	copy fasta	ZNF347	chr19	53129935	53164053
ZNF34_chr8_144767224_144792317	1/1	c0001	1620	291	67	66	112	13	31	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	c0002	1617	89	1	13	72	2	1	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	c0003	1620	25	24	1	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	c0004	1620	5	5	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317