JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF34_chr8_144767224_144792317	0/0	c0005	1620	1	0	0	0	0	1	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	c0006	1620	1	0	0	0	1	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	c0007	1617	1	0	0	0	0	1	copy fasta	ZNF34	chr8	144767224	144792317
ZNF34_chr8_144767224_144792317	0/0	c0008	1620	1	1	0	0	0	0	copy fasta	ZNF34	chr8	144767224	144792317
ZNF350_chr19_51959340_51991840	1/1	c0001	1599	186	29	42	86	7	20	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0002	1599	65	8	5	35	5	12	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0003	1599	52	29	5	11	0	7	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0004	1599	16	15	1	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0005	1599	10	9	1	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0006	1599	9	0	5	0	2	2	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0007	1599	8	0	0	8	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0008	1599	3	0	3	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0009	1599	2	0	0	2	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0010	1599	2	2	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0011	1599	2	2	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0012	1599	1	0	0	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0013	1599	1	0	0	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0014	1599	1	1	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0015	1599	1	0	0	0	0	1	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0016	1599	1	0	0	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0017	1599	1	1	0	0	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF350_chr19_51959340_51991840	0/0	c0018	1599	1	0	0	1	0	0	copy fasta	ZNF350	chr19	51959340	51991840
ZNF354A_chr5_178706512_178735659	1/1	c0001	1818	282	64	63	115	12	26	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0002	1818	105	6	16	63	3	17	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0003	1818	12	11	1	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0004	1818	5	5	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0005	1818	3	0	2	0	1	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0006	1821	3	3	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0007	1818	2	2	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0008	1818	1	0	0	0	0	1	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354A_chr5_178706512_178735659	0/0	c0009	1818	1	1	0	0	0	0	copy fasta	ZNF354A	chr5	178706512	178735659
ZNF354B_chr5_178854953_178890020	1/1	c0001	1839	237	43	30	135	6	21	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0002	1839	45	11	7	18	4	5	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0003	1839	38	2	6	30	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0004	1839	32	4	14	1	1	12	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0005	1839	18	10	6	0	1	1	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0006	1839	17	15	2	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0007	1839	8	2	1	0	2	3	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0008	1839	2	0	0	0	2	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0009	1839	2	0	2	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0010	1839	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0011	1839	1	1	0	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0012	1839	1	0	1	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0013	1839	1	0	1	0	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0014	1839	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0015	1839	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354B_chr5_178854953_178890020	0/0	c0016	1839	1	0	0	1	0	0	copy fasta	ZNF354B	chr5	178854953	178890020
ZNF354C_chr5_179055373_179088977	0/0	c0001	1665	325	58	52	180	8	27	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	1/1	c0002	1665	87	19	22	28	6	10	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0003	1665	10	2	2	0	0	6	copy fasta	ZNF354C	chr5	179055373	179088977