JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF354C_chr5_179055373_179088977	0/0	c0004	1665	8	8	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0005	1665	2	2	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0006	1665	2	1	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0007	1665	2	2	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0008	1665	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0009	1665	1	0	0	0	0	1	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0010	1665	1	1	0	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF354C_chr5_179055373_179088977	0/0	c0011	1665	1	0	1	0	0	0	copy fasta	ZNF354C	chr5	179055373	179088977
ZNF358_chr19_7511103_7526025	1/1	c0001	1707	330	68	62	159	8	31	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0002	1707	65	9	16	20	6	14	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0003	1707	8	0	3	0	2	3	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0004	1707	5	5	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0005	1707	5	5	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0006	1683	2	2	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0007	1707	1	1	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0008	1707	1	1	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0009	1707	1	0	0	1	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0010	1707	1	1	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0011	1707	1	1	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0012	1707	1	0	0	1	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0013	1707	1	1	0	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0014	1707	1	0	1	0	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF358_chr19_7511103_7526025	0/0	c0015	1707	1	0	0	1	0	0	copy fasta	ZNF358	chr19	7511103	7526025
ZNF35_chr3_44643732_44665791	1/1	c0001	1584	219	87	60	30	16	24	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0002	1584	92	2	14	60	0	16	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0003	1584	6	6	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0004	1584	2	0	2	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0005	1584	1	1	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0006	1584	1	0	0	0	0	1	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0007	1584	1	0	0	0	0	1	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0008	1584	1	1	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0009	1584	1	1	0	0	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0010	1584	1	0	0	1	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF35_chr3_44643732_44665791	0/0	c0011	1584	1	0	0	1	0	0	copy fasta	ZNF35	chr3	44643732	44665791
ZNF362_chr1_33251492_33305719	1/1	c0001	1263	338	86	59	137	10	44	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0002	1263	1	0	1	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0003	1263	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0004	1263	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0005	1263	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0006	1263	1	0	0	1	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0007	1263	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0008	1263	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF362_chr1_33251492_33305719	0/0	c0009	1263	1	1	0	0	0	0	copy fasta	ZNF362	chr1	33251492	33305719
ZNF365_chr10_62369369_62407450	1/0	c0001	1224	195	72	38	63	4	17	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/1	c0002	1224	145	8	37	68	10	21	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	c0003	1224	4	3	1	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	c0004	1224	2	0	0	2	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	c0005	1224	2	2	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	c0006	1224	1	0	0	1	0	0	copy fasta	ZNF365	chr10	62369369	62407450
ZNF365_chr10_62369369_62407450	0/0	c0007	1224	1	1	0	0	0	0	copy fasta	ZNF365	chr10	62369369	62407450