JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF366_chr5_72434903_72512410	0/1	c0001	2235	106	3	15	71	2	14	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0002	2235	103	20	14	60	2	7	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	1/0	c0003	2235	102	41	33	7	8	12	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0004	2235	18	16	2	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0005	2235	9	1	0	7	0	1	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0006	2235	4	4	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0007	2235	4	0	3	0	1	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0008	2235	3	1	0	2	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0009	2235	2	0	2	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0010	2235	2	2	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0011	2235	2	2	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0012	2235	2	2	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0013	2235	2	2	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0014	2235	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0015	2235	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0016	2235	1	0	1	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0017	2235	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0018	2195	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0019	2235	1	0	0	1	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0020	2235	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0021	2235	1	0	0	0	1	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF366_chr5_72434903_72512410	0/0	c0022	2235	1	1	0	0	0	0	copy fasta	ZNF366	chr5	72434903	72512410
ZNF367_chr9_96380941_96423370	1/1	c0001	1053	309	79	52	129	10	37	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	c0002	1053	5	0	1	0	0	4	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	c0003	1053	3	3	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	c0004	1053	1	0	1	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	c0005	1053	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	c0006	1053	1	0	0	0	0	1	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	c0007	1053	1	0	0	1	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF367_chr9_96380941_96423370	0/0	c0008	1053	1	1	0	0	0	0	copy fasta	ZNF367	chr9	96380941	96423370
ZNF37A_chr10_38089337_38129625	0/0	c0001	1686	186	38	28	97	12	11	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	1/1	c0002	1686	164	38	34	63	4	23	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	c0003	1686	24	0	13	10	0	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	c0004	1686	3	3	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	c0005	1686	3	3	0	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	c0006	1686	2	0	2	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	c0007	1686	2	0	2	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	c0008	1686	1	0	0	0	0	1	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF37A_chr10_38089337_38129625	0/0	c0009	1686	1	0	1	0	0	0	copy fasta	ZNF37A	chr10	38089337	38129625
ZNF382_chr19_36600313_36639114	0/1	c0001	1653	209	68	31	88	4	17	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	1/0	c0002	1653	104	23	32	25	7	16	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	c0003	1653	33	1	4	21	3	4	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	c0004	1653	3	0	3	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	c0005	1653	1	0	0	0	0	1	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	c0006	1653	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF382_chr19_36600313_36639114	0/0	c0007	1653	1	0	1	0	0	0	copy fasta	ZNF382	chr19	36600313	36639114
ZNF383_chr19_37213214_37253740	1/1	c0001	1428	401	90	70	185	14	40	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	c0002	1428	2	0	2	0	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF383_chr19_37213214_37253740	0/0	c0003	1428	1	0	0	1	0	0	copy fasta	ZNF383	chr19	37213214	37253740
ZNF384_chr12_6661477_6694375	0/1	c0001	1824	180	58	40	56	2	23	copy fasta	ZNF384	chr12	6661477	6694375