JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF384_chr12_6661477_6694375	1/0	c0002	1827	41	8	6	19	2	5	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0003	1824	13	13	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0004	1827	10	0	0	10	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0005	1824	9	3	3	0	0	3	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0006	1827	5	1	4	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0007	1815	4	0	3	0	0	1	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0008	1821	2	2	0	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0009	1830	2	1	1	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0010	1817	1	0	1	0	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF384_chr12_6661477_6694375	0/0	c0011	1824	1	0	0	1	0	0	copy fasta	ZNF384	chr12	6661477	6694375
ZNF385A_chr12_54364136_54389733	1/1	c0001	1101	296	79	46	139	7	23	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	c0002	1101	122	7	30	67	3	15	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	c0003	1101	9	9	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	c0004	1101	1	1	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	c0005	1101	1	1	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385A_chr12_54364136_54389733	0/0	c0006	1101	1	1	0	0	0	0	copy fasta	ZNF385A	chr12	54364136	54389733
ZNF385B_chr2_179436982_179866612	0/0	c0001	1461	87	22	33	18	4	10	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	c0002	1461	17	12	3	2	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	c0003	1461	8	6	2	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	c0004	1461	4	4	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	c0005	1461	1	1	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385B_chr2_179436982_179866612	0/0	c0006	1461	1	1	0	0	0	0	copy fasta	ZNF385B	chr2	179436982	179866612
ZNF385C_chr17_42020576_42103473	1/1	c0001	1512	179	51	32	74	6	14	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0002	1512	27	14	6	4	1	2	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0003	1512	20	18	2	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0004	1512	3	3	0	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0005	1512	2	2	0	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0006	1512	1	0	0	1	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0007	1512	1	1	0	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0008	1512	1	0	0	1	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0009	1512	1	0	0	0	1	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385C_chr17_42020576_42103473	0/0	c0010	1512	1	1	0	0	0	0	copy fasta	ZNF385C	chr17	42020576	42103473
ZNF385D_chr3_21407218_21756210	0/0	c0001	1188	128	42	24	42	3	17	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/1	c0002	1188	60	8	15	23	4	9	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0003	1188	45	20	8	13	3	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	1/0	c0004	1188	10	0	5	0	0	4	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0005	1188	5	5	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0006	1188	3	3	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0007	1188	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0008	1188	1	1	0	0	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0009	1188	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0010	1188	1	0	0	1	0	0	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF385D_chr3_21407218_21756210	0/0	c0011	1188	1	0	0	0	0	1	copy fasta	ZNF385D	chr3	21407218	21756210
ZNF391_chr6_27383759_27408908	1/1	c0001	1077	370	78	72	163	10	45	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	c0002	1077	13	0	0	13	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	c0003	1077	10	10	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	c0004	1077	5	4	1	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	c0005	1077	2	2	0	0	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	c0006	1077	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908
ZNF391_chr6_27383759_27408908	0/0	c0007	1077	1	0	0	1	0	0	copy fasta	ZNF391	chr6	27383759	27408908