JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BSPRY_chr9_113344541_113376222	0/0	c0004	1209	33	1	7	21	0	4	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0005	1209	16	7	4	4	0	1	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0006	1209	4	1	0	0	0	3	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0007	1209	4	0	0	4	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0008	1209	2	0	0	2	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0009	1179	1	0	0	0	1	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0010	1209	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0011	1209	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0012	1209	1	0	1	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0013	1209	1	0	0	1	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0014	1209	1	1	0	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BSPRY_chr9_113344541_113376222	0/0	c0015	1209	1	0	1	0	0	0	copy fasta	BSPRY	chr9	113344541	113376222
BST1_chr4_15698065_15737787	1/0	c0001	957	243	56	53	86	9	38	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0002	957	47	5	1	37	0	4	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0003	957	40	1	4	33	0	2	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0004	957	34	3	2	29	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/1	c0005	957	24	0	8	10	5	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0006	957	10	9	1	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0007	957	9	1	0	8	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0008	957	7	7	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0009	957	4	0	1	3	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0010	957	4	4	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0011	957	3	3	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0012	957	2	0	0	1	0	1	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0013	957	2	2	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0014	957	2	2	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0015	957	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0016	957	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0017	957	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0018	957	1	0	0	0	0	1	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0019	957	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0020	957	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0021	957	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0022	957	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0023	957	1	0	0	1	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0024	957	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST1_chr4_15698065_15737787	0/0	c0025	957	1	1	0	0	0	0	copy fasta	BST1	chr4	15698065	15737787
BST2_chr19_17397939_17410630	1/1	c0001	543	404	86	74	179	15	48	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	c0002	543	4	2	1	0	1	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	c0003	543	1	0	1	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	c0004	543	1	1	0	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	c0005	543	1	1	0	0	0	0	copy fasta	BST2	chr19	17397939	17410630
BST2_chr19_17397939_17410630	0/0	c0006	543	1	0	0	1	0	0	copy fasta	BST2	chr19	17397939	17410630
BSX_chr11_122972570_122986834	1/1	c0001	702	403	86	65	188	15	47	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	c0002	702	10	10	0	0	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	c0003	702	4	4	0	0	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	c0004	702	2	0	2	0	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	c0005	702	1	0	1	0	0	0	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	c0006	702	1	0	0	0	0	1	copy fasta	BSX	chr11	122972570	122986834
BSX_chr11_122972570_122986834	0/0	c0007	702	1	0	0	0	1	0	copy fasta	BSX	chr11	122972570	122986834