JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF398_chr7_149142453_149188042	0/0	c0006	1929	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	c0007	1929	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	c0008	1929	1	1	0	0	0	0	copy fasta	ZNF398	chr7	149142453	149188042
ZNF398_chr7_149142453_149188042	0/0	c0009	1929	1	0	0	0	0	1	copy fasta	ZNF398	chr7	149142453	149188042
ZNF3_chr7_100064973_100086723	1/1	c0001	1341	354	81	59	153	16	43	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0002	1341	53	6	12	29	2	4	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0003	1338	5	0	0	5	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0004	1341	2	2	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0005	1341	1	0	0	1	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0006	1341	1	0	0	0	0	1	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0007	1341	1	0	0	0	0	1	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0008	1341	1	0	1	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0009	1341	1	0	0	0	0	1	copy fasta	ZNF3	chr7	100064973	100086723
ZNF3_chr7_100064973_100086723	0/0	c0010	1341	1	1	0	0	0	0	copy fasta	ZNF3	chr7	100064973	100086723
ZNF404_chr19_43867365_43888964	0/0	c0001	1659	178	47	28	77	8	18	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0002	1659	159	12	38	86	8	15	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0003	3549	11	11	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0004	1659	5	1	3	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0005	1659	4	4	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0006	3546	3	2	1	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0007	1659	2	0	1	0	1	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0008	1659	2	0	1	0	1	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0009	1659	2	2	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0010	3545	2	2	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0011	3550	2	2	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0012	1659	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0013	1659	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0014	1659	1	0	0	0	0	1	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0015	1659	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0016	1659	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0017	1659	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0018	1659	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0019	1659	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0020	3546	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0021	3553	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0022	3549	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0023	3552	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0024	3550	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0025	3548	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0026	1659	1	1	0	0	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF404_chr19_43867365_43888964	0/0	c0027	1659	1	0	0	1	0	0	copy fasta	ZNF404	chr19	43867365	43888964
ZNF407_chr18_74592870_75070671	0/0	c0001	6747	14	4	5	4	0	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/1	c0002	6747	8	6	0	0	0	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0003	6747	7	6	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0004	6747	6	3	1	1	0	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0005	6747	6	3	3	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0006	6747	6	3	3	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0007	6747	5	0	4	0	1	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0008	6747	4	4	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0009	6747	3	0	0	3	0	0	copy fasta	ZNF407	chr18	74592870	75070671