JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF407_chr18_74592870_75070671	0/0	c0010	6747	3	1	2	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0011	6747	3	2	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0012	6747	2	2	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0013	6747	2	0	1	1	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0014	6747	2	1	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0015	6747	2	0	2	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0016	6747	2	0	2	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0017	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0018	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0019	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0020	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0021	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0022	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0023	6747	1	0	0	0	1	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0024	6747	1	0	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0025	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0026	6747	1	0	0	0	0	1	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0027	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0028	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0029	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0030	6747	1	1	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0031	6747	1	0	1	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	0/0	c0032	6747	1	0	0	1	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF407_chr18_74592870_75070671	1/0	c0033	6747	1	0	0	0	0	0	copy fasta	ZNF407	chr18	74592870	75070671
ZNF408_chr11_46696031_46710912	1/0	c0001	2163	213	55	50	67	11	29	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/1	c0002	2151	100	1	16	76	1	5	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0003	2163	32	30	2	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0004	2163	5	5	0	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0005	2163	2	0	0	0	0	2	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0006	2163	1	0	0	1	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0007	2151	1	0	0	1	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0008	2163	1	0	0	1	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0009	2163	1	0	1	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0010	2163	1	1	0	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0011	2163	1	0	0	0	0	1	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0012	2163	1	0	0	0	0	1	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0013	2117	1	1	0	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0014	2163	1	0	1	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF408_chr11_46696031_46710912	0/0	c0015	2163	1	1	0	0	0	0	copy fasta	ZNF408	chr11	46696031	46710912
ZNF410_chr14_73881859_73937521	1/1	c0001	1437	334	71	54	164	9	34	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	c0002	1437	63	18	14	16	5	10	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	c0003	1437	1	0	0	1	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	c0004	1437	1	0	0	1	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF410_chr14_73881859_73937521	0/0	c0005	1437	1	1	0	0	0	0	copy fasta	ZNF410	chr14	73881859	73937521
ZNF414_chr19_8504678_8519167	1/1	c0001	1173	176	50	45	53	8	18	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0002	1173	135	18	22	83	4	8	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0003	1173	70	21	10	29	4	6	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0004	1174	12	0	3	6	0	3	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0005	1174	10	3	0	3	0	4	copy fasta	ZNF414	chr19	8504678	8519167
ZNF414_chr19_8504678_8519167	0/0	c0006	1174	6	3	2	1	0	0	copy fasta	ZNF414	chr19	8504678	8519167