JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF417_chr19_57900774_57921592	0/0	c0009	1728	4	0	1	3	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0010	1728	3	0	3	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0011	1728	3	3	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0012	1728	3	0	0	3	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0013	1728	3	0	0	2	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0014	1728	3	3	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0015	1728	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0016	1728	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0017	1728	2	2	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0018	1728	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0019	1728	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0020	1728	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0021	1728	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0022	1728	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0023	1728	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0024	1728	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0025	1728	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0026	1687	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0027	1728	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0028	1728	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0029	1728	1	0	1	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0030	1728	1	1	0	0	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0031	1728	1	0	0	0	0	1	copy fasta	ZNF417	chr19	57900774	57921592
ZNF417_chr19_57900774_57921592	0/0	c0032	1728	1	0	0	1	0	0	copy fasta	ZNF417	chr19	57900774	57921592
ZNF418_chr19_57916882_57940402	1/1	c0001	2031	228	41	45	99	12	29	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0002	2031	153	24	30	82	6	11	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0003	2031	17	17	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0004	2031	5	5	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0005	2031	4	0	0	4	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0006	2031	3	3	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0007	2031	2	0	0	0	0	2	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0008	2031	2	0	0	2	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0009	2031	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0010	2019	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0011	2031	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0012	2031	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0013	2031	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0014	2031	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0015	2031	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0016	2031	1	0	0	1	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0017	1863	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0018	2031	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0019	2031	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0020	2031	1	0	1	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0021	2031	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF418_chr19_57916882_57940402	0/0	c0022	2031	1	1	0	0	0	0	copy fasta	ZNF418	chr19	57916882	57940402
ZNF419_chr19_57482750_57501098	0/1	c0001	1533	172	23	28	91	4	25	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	1/0	c0002	1533	124	45	13	52	4	9	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0003	1533	93	22	26	29	6	10	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0004	1533	8	0	0	8	0	0	copy fasta	ZNF419	chr19	57482750	57501098