JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF419_chr19_57482750_57501098	0/0	c0005	1533	3	0	2	0	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0006	1533	3	0	2	0	1	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0007	1533	2	0	0	0	0	2	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0008	1533	2	2	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0009	1533	2	0	0	2	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0010	1533	2	1	1	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0011	1533	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0012	1533	1	0	0	0	1	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0013	1533	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0014	1533	1	0	0	0	0	1	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0015	1533	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0016	1533	1	0	0	1	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF419_chr19_57482750_57501098	0/0	c0017	1533	1	1	0	0	0	0	copy fasta	ZNF419	chr19	57482750	57501098
ZNF41_chrX_47440178_47488222	1/1	c0001	2340	264	45	54	123	11	29	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0002	2340	13	7	2	4	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0003	2340	8	7	1	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0004	2340	8	8	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0005	2340	7	7	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0006	2340	5	1	0	3	0	1	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0007	2340	4	0	0	4	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0008	2340	3	0	0	3	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0009	2340	3	0	0	0	2	1	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0010	2340	2	2	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0011	2340	2	0	0	2	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0012	2340	1	1	0	0	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0013	2340	1	0	0	0	0	1	copy fasta	ZNF41	chrX	47440178	47488222
ZNF41_chrX_47440178_47488222	0/0	c0014	2340	1	0	0	1	0	0	copy fasta	ZNF41	chrX	47440178	47488222
ZNF420_chr19_37073433_37135368	1/1	c0001	2067	291	66	61	114	12	36	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	c0002	2067	19	9	5	4	0	1	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	c0003	2067	7	7	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	c0004	2067	5	3	2	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	c0005	2067	1	0	0	1	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	c0006	2067	1	0	0	0	0	1	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	c0007	2067	1	0	0	1	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF420_chr19_37073433_37135368	0/0	c0008	2067	1	1	0	0	0	0	copy fasta	ZNF420	chr19	37073433	37135368
ZNF423_chr16_49482524_49861112	1/0	c0001	3879	72	4	25	26	5	11	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0002	3879	42	23	7	8	2	2	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0003	3879	40	12	10	16	1	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0004	3879	11	0	0	7	0	4	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0005	3879	6	6	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0006	3879	4	4	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0007	3879	4	3	1	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0008	3879	3	0	0	1	1	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0009	3879	2	0	2	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0010	3879	2	0	1	0	0	1	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0011	3879	2	2	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0012	3879	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0013	3879	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0014	3879	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0015	3879	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112