JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF423_chr16_49482524_49861112	0/0	c0016	3879	1	0	0	1	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/1	c0017	3879	1	0	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0018	3879	1	1	0	0	0	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF423_chr16_49482524_49861112	0/0	c0019	3879	1	0	0	0	1	0	copy fasta	ZNF423	chr16	49482524	49861112
ZNF425_chr7_149097784_149131324	0/1	c0001	2259	166	17	32	82	9	25	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0002	2259	66	29	10	18	4	5	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	1/0	c0003	2259	41	23	12	1	2	2	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0004	2259	19	18	1	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0005	2259	8	4	4	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0006	2259	3	0	2	0	1	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0007	2259	3	0	0	3	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0008	2259	3	3	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0009	2259	2	0	2	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0010	2259	2	2	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0011	2259	1	0	0	0	0	1	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0012	2259	1	0	1	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0013	2259	1	0	0	1	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0014	2259	1	1	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0015	2259	1	1	0	0	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0016	2259	1	0	0	1	0	0	copy fasta	ZNF425	chr7	149097784	149131324
ZNF425_chr7_149097784_149131324	0/0	c0017	2259	1	0	0	0	0	1	copy fasta	ZNF425	chr7	149097784	149131324
ZNF426_chr19_9518223_9543645	1/1	c0001	1665	343	49	54	182	18	38	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0002	1665	64	40	14	3	0	7	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0003	1665	7	0	2	5	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0004	1665	2	2	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0005	1665	1	0	1	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0006	1665	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0007	1665	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0008	1665	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0009	1665	1	0	1	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0010	1665	1	0	0	1	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0011	1665	1	1	0	0	0	0	copy fasta	ZNF426	chr19	9518223	9543645
ZNF426_chr19_9518223_9543645	0/0	c0012	1665	1	0	0	0	0	1	copy fasta	ZNF426	chr19	9518223	9543645
ZNF428_chr19_43602224_43624629	1/1	c0001	567	422	90	80	188	14	48	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	c0002	567	1	0	0	0	1	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	c0003	567	1	1	0	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	c0004	567	1	0	0	0	1	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF428_chr19_43602224_43624629	0/0	c0005	567	1	1	0	0	0	0	copy fasta	ZNF428	chr19	43602224	43624629
ZNF429_chr19_21500602_21545668	0/0	c0001	2025	120	31	12	63	5	9	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	1/1	c0002	2025	87	21	10	42	4	8	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0003	2025	3	0	0	3	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0004	2025	2	0	0	0	0	2	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0005	2025	2	2	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0006	2025	1	0	0	0	0	1	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0007	2025	1	0	0	0	1	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0008	2025	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0009	2025	1	0	0	1	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0010	2025	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0011	2025	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF429_chr19_21500602_21545668	0/0	c0012	2025	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668