JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF429_chr19_21500602_21545668	0/0	c0013	2025	1	1	0	0	0	0	copy fasta	ZNF429	chr19	21500602	21545668
ZNF430_chr19_21015657_21065050	1/1	c0001	1713	272	64	54	95	14	43	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0002	1713	16	16	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0003	1713	3	1	2	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0004	1713	2	2	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0005	1713	1	1	0	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0006	1713	1	0	0	1	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0007	1713	1	0	0	0	0	1	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0008	1713	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF430_chr19_21015657_21065050	0/0	c0009	1713	1	0	1	0	0	0	copy fasta	ZNF430	chr19	21015657	21065050
ZNF431_chr19_21137040_21201053	1/1	c0001	1731	245	60	44	102	11	26	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	c0002	1731	42	28	9	0	3	2	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	c0003	1731	2	0	0	2	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	c0004	1731	2	0	2	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	c0005	1731	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	c0006	1731	1	0	0	1	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF431_chr19_21137040_21201053	0/0	c0007	1731	1	0	1	0	0	0	copy fasta	ZNF431	chr19	21137040	21201053
ZNF432_chr19_52026378_52053838	1/1	c0001	1959	177	24	30	94	8	19	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0002	1959	154	42	19	71	6	16	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0003	1959	72	18	18	24	1	11	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0004	1959	16	11	4	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0005	1959	4	0	3	0	1	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0006	1959	2	0	0	2	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0007	1959	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0008	1959	1	0	0	1	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF432_chr19_52026378_52053838	0/0	c0009	1959	1	1	0	0	0	0	copy fasta	ZNF432	chr19	52026378	52053838
ZNF433_chr19_12009715_12040679	1/1	c0001	2013	312	89	54	121	10	36	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0002	2013	14	0	0	14	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0003	2013	2	0	0	2	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0004	2013	2	2	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0005	2013	2	2	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0006	2013	2	2	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0007	2013	1	0	0	1	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0008	2013	1	0	1	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0009	2013	1	0	0	1	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0010	2013	1	0	0	1	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0011	2013	1	0	0	0	0	1	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0012	2013	1	0	0	0	0	1	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0013	2013	1	0	1	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF433_chr19_12009715_12040679	0/0	c0014	2013	1	1	0	0	0	0	copy fasta	ZNF433	chr19	12009715	12040679
ZNF436_chr1_23354448_23374836	0/1	c0001	1413	174	21	37	94	7	14	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	1/0	c0002	1413	128	55	23	35	6	8	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0003	1413	70	1	8	45	3	13	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0004	1413	6	5	1	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0005	1413	3	3	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0006	1413	2	2	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0007	1413	2	2	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0008	1413	2	0	0	2	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0009	1413	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0010	1413	1	1	0	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836