JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF436_chr1_23354448_23374836	0/0	c0011	1413	1	0	0	1	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0012	1413	1	0	0	0	0	1	copy fasta	ZNF436	chr1	23354448	23374836
ZNF436_chr1_23354448_23374836	0/0	c0013	1413	1	0	1	0	0	0	copy fasta	ZNF436	chr1	23354448	23374836
ZNF438_chr10_30839632_31036865	1/0	c0001	2487	104	15	27	27	13	21	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/1	c0002	2487	97	28	16	39	3	10	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0003	2487	43	1	7	33	2	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0004	2487	17	14	3	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0005	2487	13	12	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0006	2487	7	0	0	7	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0007	2487	5	0	4	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0008	2487	5	1	0	4	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0009	2487	4	4	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0010	2487	3	0	3	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0011	2487	2	1	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0012	2487	2	0	0	2	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0013	2487	1	0	0	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0014	2487	1	0	0	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0015	2487	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0016	2487	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0017	2487	1	0	0	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0018	2487	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0019	2487	1	0	0	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0020	2487	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0021	2487	1	0	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0022	2487	1	0	0	1	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0023	2487	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0024	2487	1	0	0	0	0	1	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0025	2487	1	1	0	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF438_chr10_30839632_31036865	0/0	c0026	2487	1	0	1	0	0	0	copy fasta	ZNF438	chr10	30839632	31036865
ZNF439_chr19_11843726_11874486	1/1	c0001	1515	259	74	55	90	8	30	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0002	1515	19	1	8	1	5	4	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0003	1515	16	0	3	11	1	1	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0004	1515	9	0	0	9	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0005	1515	7	7	0	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0006	1515	3	2	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0007	1515	3	2	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0008	1515	1	0	0	1	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0009	1515	1	0	0	0	0	1	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0010	1515	1	0	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF439_chr19_11843726_11874486	0/0	c0011	1515	1	0	1	0	0	0	copy fasta	ZNF439	chr19	11843726	11874486
ZNF43_chr19_21799946_21841182	1/1	c0001	2430	352	74	62	159	15	40	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0002	2430	17	16	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0003	2430	2	2	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0004	2430	2	0	0	2	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0005	2430	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0006	2430	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0007	2430	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0008	2430	1	0	0	0	1	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0009	2430	1	0	1	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF43_chr19_21799946_21841182	0/0	c0010	2430	1	1	0	0	0	0	copy fasta	ZNF43	chr19	21799946	21841182