JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF43_chr19_21799946_21841182	0/0	c0011	2430	1	0	0	1	0	0	copy fasta	ZNF43	chr19	21799946	21841182
ZNF440_chr19_11809273_11840216	0/1	c0001	1788	159	10	33	87	10	18	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0002	1788	85	23	8	48	0	6	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0003	1788	63	30	13	11	1	8	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0004	1788	15	0	2	13	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	1/0	c0005	1788	10	1	5	0	1	2	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0006	1788	9	1	4	0	3	1	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0007	1788	9	7	1	0	1	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0008	1788	5	5	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0009	1788	2	0	2	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0010	1788	2	2	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0011	1788	2	0	0	2	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0012	1788	2	2	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0013	1788	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0014	1788	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0015	1788	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0016	1788	1	1	0	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0017	1788	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0018	1788	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0019	1788	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0020	1788	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0021	1788	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0022	1788	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0023	1788	1	0	1	0	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0024	1788	1	0	0	0	0	1	copy fasta	ZNF440	chr19	11809273	11840216
ZNF440_chr19_11809273_11840216	0/0	c0025	1788	1	0	0	1	0	0	copy fasta	ZNF440	chr19	11809273	11840216
ZNF441_chr19_11762000_11789078	0/1	c0001	2082	295	67	51	143	7	26	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	1/0	c0002	2082	34	3	12	9	5	4	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0003	2082	15	0	0	15	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0004	2082	8	0	6	0	0	2	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0005	2082	6	6	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0006	2082	4	0	0	2	0	2	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0007	2082	2	2	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0008	2082	2	0	0	2	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0009	2082	2	2	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0010	2082	2	1	1	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0011	2082	1	0	0	0	0	1	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0012	2082	1	0	1	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0013	2082	1	0	1	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0014	2082	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0015	2082	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0016	2082	1	0	0	0	0	1	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0017	2082	1	0	0	1	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF441_chr19_11762000_11789078	0/0	c0018	2082	1	1	0	0	0	0	copy fasta	ZNF441	chr19	11762000	11789078
ZNF442_chr19_12340944_12370683	1/1	c0001	1884	231	45	47	93	12	32	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0002	1884	16	14	2	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0003	1884	11	10	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0004	1884	5	5	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0005	1884	4	4	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0006	1884	4	0	0	2	0	2	copy fasta	ZNF442	chr19	12340944	12370683