JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTAF1_chr10_91918770_92036437	1/1	c0001	5550	307	77	61	121	11	35	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0002	5550	4	4	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0003	5550	3	3	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0004	5550	3	3	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0005	5550	2	0	0	2	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0006	5550	2	0	0	0	0	2	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0007	5550	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0008	5550	1	1	0	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0009	5550	1	0	0	0	1	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0010	5550	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0011	5574	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0012	5550	1	0	1	0	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0013	5550	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0014	5550	1	0	0	1	0	0	copy fasta	BTAF1	chr10	91918770	92036437
BTAF1_chr10_91918770_92036437	0/0	c0015	5550	1	0	0	0	0	1	copy fasta	BTAF1	chr10	91918770	92036437
BTBD10_chr11_13383008_13468222	1/1	c0001	1428	277	80	37	118	9	31	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	c0002	1428	67	4	20	37	3	3	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	c0003	1428	4	4	0	0	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	c0004	1428	4	3	1	0	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	c0005	1428	2	0	0	0	0	2	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	c0006	1428	1	1	0	0	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD10_chr11_13383008_13468222	0/0	c0007	1428	1	0	0	1	0	0	copy fasta	BTBD10	chr11	13383008	13468222
BTBD16_chr10_122266296_122343159	0/1	c0001	1521	80	9	12	44	4	10	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	1/0	c0002	1521	76	8	27	19	8	13	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0003	1521	46	0	7	35	1	3	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0004	1521	40	4	7	22	3	4	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0005	1521	40	31	6	0	2	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0006	1521	22	0	5	16	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0007	1521	11	0	1	8	0	2	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0008	1521	6	6	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0009	1521	6	6	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0010	1521	5	0	0	5	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0011	1521	5	0	1	4	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0012	1521	5	4	1	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0013	1521	4	4	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0014	1521	4	4	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0015	1521	3	3	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0016	1521	3	3	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0017	1521	2	0	0	2	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0018	1521	2	0	0	2	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0019	1521	2	0	0	2	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0020	1521	2	1	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0021	1521	1	0	0	1	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0022	1521	1	0	1	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0023	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0024	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0025	1521	1	0	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0026	1521	1	0	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0027	1521	1	0	0	1	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0028	1521	1	0	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159