JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF442_chr19_12340944_12370683	0/0	c0007	1884	4	4	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0008	1884	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0009	1884	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0010	1884	2	0	1	0	1	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0011	1884	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0012	1884	2	0	0	2	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0013	1884	2	0	0	0	0	2	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0014	1884	2	2	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0015	1884	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0016	1884	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0017	1884	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0018	1884	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0019	1884	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0020	1884	1	0	1	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0021	1884	1	1	0	0	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0022	1884	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0023	1884	1	0	0	0	0	1	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0024	1884	1	0	0	1	0	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF442_chr19_12340944_12370683	0/0	c0025	1884	1	0	0	0	1	0	copy fasta	ZNF442	chr19	12340944	12370683
ZNF443_chr19_12424706_12446021	1/1	c0001	2016	158	25	28	87	2	14	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0002	2016	86	23	15	32	2	14	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0003	2016	59	7	22	22	5	3	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0004	2016	54	8	5	37	1	3	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0005	2016	14	8	1	0	0	5	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0006	2016	6	6	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0007	2016	5	4	1	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0008	2016	4	4	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0009	2017	4	2	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0010	2017	2	0	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0011	2016	2	0	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0012	2016	2	0	0	2	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0013	2016	2	0	0	0	1	1	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0014	2016	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0015	2016	1	0	0	1	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0016	2016	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0017	2016	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0018	2016	1	0	0	0	0	1	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0019	2016	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0020	2017	1	0	0	1	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0021	2016	1	0	0	0	1	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0022	2016	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0023	2016	1	0	0	0	0	1	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0024	2017	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF443_chr19_12424706_12446021	0/0	c0025	2016	1	1	0	0	0	0	copy fasta	ZNF443	chr19	12424706	12446021
ZNF444_chr19_56136287_56165893	1/1	c0001	984	326	77	75	127	13	32	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0002	984	54	1	0	46	1	6	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0003	975	9	5	2	0	2	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0004	984	5	5	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0005	993	4	4	0	0	0	0	copy fasta	ZNF444	chr19	56136287	56165893
ZNF444_chr19_56136287_56165893	0/0	c0006	985	3	0	1	2	0	0	copy fasta	ZNF444	chr19	56136287	56165893