JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF44_chr19_12266808_12299883	0/0	c0004	1848	2	2	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0005	1848	2	0	0	2	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0006	1848	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0007	1848	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0008	1848	1	0	0	0	0	1	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0009	1848	1	0	1	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0010	1848	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0011	1848	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0012	1848	1	0	1	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0013	1848	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0014	1848	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF44_chr19_12266808_12299883	0/0	c0015	1848	1	1	0	0	0	0	copy fasta	ZNF44	chr19	12266808	12299883
ZNF451_chr6_57085188_57175305	1/1	c0001	3186	105	34	29	28	6	6	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	c0002	3186	85	37	15	23	4	6	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	c0003	3186	1	0	0	0	0	1	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	c0004	3186	1	1	0	0	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	c0005	3186	1	0	0	1	0	0	copy fasta	ZNF451	chr6	57085188	57175305
ZNF451_chr6_57085188_57175305	0/0	c0006	3186	1	0	0	0	0	1	copy fasta	ZNF451	chr6	57085188	57175305
ZNF454_chr5_178936198_178971433	0/1	c0001	1569	228	52	45	89	14	27	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0002	1569	110	5	19	70	2	14	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0003	1569	33	0	4	29	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	1/0	c0004	1569	28	25	2	0	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0005	1569	2	0	0	0	0	2	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0006	1569	1	0	0	1	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0007	1569	1	1	0	0	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0008	1569	1	0	0	1	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0009	1569	1	1	0	0	0	0	copy fasta	ZNF454	chr5	178936198	178971433
ZNF454_chr5_178936198_178971433	0/0	c0010	1569	1	0	0	0	0	1	copy fasta	ZNF454	chr5	178936198	178971433
ZNF45_chr19_43907624_43940282	0/0	c0001	2049	194	23	48	97	10	16	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/1	c0002	2049	108	38	18	28	5	18	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0003	2049	62	7	5	49	0	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0004	2049	8	8	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0005	2049	5	0	4	0	1	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0006	2049	5	5	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0007	2049	4	4	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0008	2049	4	4	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0009	2049	2	1	1	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	1/0	c0010	2049	2	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0011	2049	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0012	2049	1	0	0	0	0	1	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0013	2049	1	0	0	1	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0014	2049	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0015	2049	1	0	0	1	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF45_chr19_43907624_43940282	0/0	c0016	2049	1	1	0	0	0	0	copy fasta	ZNF45	chr19	43907624	43940282
ZNF460_chr19_57275485_57299069	1/1	c0001	1689	304	65	48	147	9	33	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0002	1689	92	8	25	48	3	8	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0003	1689	14	13	1	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0004	1689	13	0	7	0	4	2	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0005	1689	6	6	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0006	1689	3	0	0	3	0	0	copy fasta	ZNF460	chr19	57275485	57299069