JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF460_chr19_57275485_57299069	0/0	c0007	1689	3	3	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0008	1689	1	1	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0009	1689	1	1	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0010	1689	1	1	0	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0011	1689	1	0	1	0	0	0	copy fasta	ZNF460	chr19	57275485	57299069
ZNF460_chr19_57275485_57299069	0/0	c0012	1689	1	0	0	0	0	1	copy fasta	ZNF460	chr19	57275485	57299069
ZNF461_chr19_36631618_36671837	1/1	c0001	1692	289	66	56	122	13	30	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0002	1692	40	13	7	17	0	3	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0003	1692	7	7	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0004	1689	6	0	5	0	0	1	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0005	1692	6	0	5	0	1	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0006	1692	3	0	1	0	0	2	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0007	1692	1	1	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0008	1692	1	1	0	0	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF461_chr19_36631618_36671837	0/0	c0009	1692	1	0	0	1	0	0	copy fasta	ZNF461	chr19	36631618	36671837
ZNF462_chr9_106858166_107018634	1/0	c0001	7521	50	4	5	32	4	4	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0002	7521	45	33	3	8	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0003	7521	26	8	2	14	1	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0004	7521	15	1	3	6	1	4	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/1	c0005	7521	9	3	4	0	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0006	7521	6	5	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0007	7521	6	6	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0008	7521	4	3	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0009	7521	4	4	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0010	7521	3	3	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0011	7521	3	3	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0012	7521	2	1	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0013	7521	2	1	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0014	7521	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0015	7521	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0016	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0017	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0018	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0019	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0020	7521	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0021	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0022	7521	1	0	0	0	0	1	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0023	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0024	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0025	7521	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0026	7521	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0027	7521	1	0	1	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0028	7521	1	0	0	1	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0029	7506	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF462_chr9_106858166_107018634	0/0	c0030	7521	1	1	0	0	0	0	copy fasta	ZNF462	chr9	106858166	107018634
ZNF467_chr7_149759182_149778588	1/0	c0001	1788	260	19	63	124	13	40	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0002	1788	31	11	4	12	2	2	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0003	1788	23	23	0	0	0	0	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/1	c0004	1788	23	14	6	0	1	1	copy fasta	ZNF467	chr7	149759182	149778588
ZNF467_chr7_149759182_149778588	0/0	c0005	1788	15	10	2	2	0	1	copy fasta	ZNF467	chr7	149759182	149778588