JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF469_chr16_88377959_88445753	0/0	c0162	11813	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0163	11862	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0164	11862	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0165	11862	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0166	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0167	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0168	11862	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0169	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0170	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0171	11862	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0172	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0173	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0174	11862	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0175	11862	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0176	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0177	11862	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0178	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0179	11862	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0180	11862	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0181	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0182	11862	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0183	11862	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	1/0	c0184	11862	1	0	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0185	11862	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0186	11862	1	0	1	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0187	11862	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0188	11862	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0189	11842	1	1	0	0	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0190	11862	1	0	0	0	0	1	copy fasta	ZNF469	chr16	88377959	88445753
ZNF469_chr16_88377959_88445753	0/0	c0191	11862	1	0	0	1	0	0	copy fasta	ZNF469	chr16	88377959	88445753
ZNF470_chr19_56562468_56587894	0/1	c0001	2154	112	3	27	62	7	12	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	1/0	c0002	2154	100	1	23	58	2	15	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0003	2154	74	59	10	0	1	4	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0004	2154	56	11	13	15	6	11	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0005	2154	37	0	2	31	0	4	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0006	2154	19	8	1	10	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0007	2154	10	10	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0008	2154	2	0	0	0	2	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0009	2154	2	2	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0010	2154	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0011	2154	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0012	2154	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0013	2154	1	0	0	0	0	1	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0014	2154	1	0	0	0	0	1	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0015	2154	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0016	2154	1	0	0	1	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF470_chr19_56562468_56587894	0/0	c0017	2154	1	1	0	0	0	0	copy fasta	ZNF470	chr19	56562468	56587894
ZNF471_chr19_56502855_56535212	1/0	c0001	1881	246	51	43	123	4	24	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/1	c0002	1881	81	7	17	38	4	14	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0003	1881	43	23	5	10	2	3	copy fasta	ZNF471	chr19	56502855	56535212