JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF471_chr19_56502855_56535212	0/0	c0004	1881	16	1	8	0	2	5	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0005	1881	6	6	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0006	1881	6	0	0	6	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0007	1881	5	0	0	5	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0008	1881	2	2	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0009	1881	2	0	2	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0010	1881	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0011	1881	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0012	1881	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0013	1881	1	1	0	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF471_chr19_56502855_56535212	0/0	c0014	1881	1	0	1	0	0	0	copy fasta	ZNF471	chr19	56502855	56535212
ZNF473_chr19_50021005_50053776	1/1	c0001	2616	367	67	62	182	11	43	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0002	2616	23	20	3	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0003	2616	6	6	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0004	2616	3	0	0	3	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0005	2616	2	2	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0006	2616	2	0	0	2	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0007	2616	2	0	0	0	1	1	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0008	2616	2	0	0	2	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0009	2616	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0010	2616	1	1	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0011	2616	1	1	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0012	2616	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0013	2616	1	1	0	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0014	2616	1	0	0	0	0	1	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0015	2616	1	0	0	0	0	1	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0016	2616	1	0	1	0	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF473_chr19_50021005_50053776	0/0	c0017	2616	1	0	0	1	0	0	copy fasta	ZNF473	chr19	50021005	50053776
ZNF474_chr5_122124546_122158569	1/0	c0001	1095	204	44	45	84	9	21	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/1	c0002	1095	65	0	13	36	3	12	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0003	1094	46	27	5	11	0	3	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0004	1094	31	5	2	24	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0005	1095	6	6	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0006	1095	5	4	1	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0007	1095	4	0	0	4	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0008	1095	3	0	1	0	0	2	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0009	1094	3	3	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0010	1095	2	0	1	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0011	1095	2	0	0	0	0	2	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0012	1094	2	2	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0013	1095	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0014	1094	1	0	0	0	0	1	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0015	1095	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0016	1094	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0017	1095	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0018	1095	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0019	1094	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0020	1095	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0021	1095	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0022	1095	1	0	0	0	0	1	copy fasta	ZNF474	chr5	122124546	122158569