JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTBD16_chr10_122266296_122343159	0/0	c0029	1521	1	0	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0030	1521	1	0	0	0	0	1	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0031	1521	1	0	0	1	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0032	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0033	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0034	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0035	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0036	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0037	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD16_chr10_122266296_122343159	0/0	c0038	1521	1	1	0	0	0	0	copy fasta	BTBD16	chr10	122266296	122343159
BTBD17_chr17_74351416_74366868	1/0	c0001	1437	387	79	63	193	10	41	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/1	c0002	1437	38	4	19	6	2	6	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0003	1437	7	7	0	0	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0004	1437	4	4	0	0	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0005	1437	1	0	0	0	1	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0006	1437	1	0	1	0	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0007	1437	1	0	1	0	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0008	1437	1	0	0	0	0	1	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0009	1437	1	0	0	1	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0010	1437	1	0	0	1	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0011	1437	1	0	0	1	0	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD17_chr17_74351416_74366868	0/0	c0012	1437	1	0	0	0	1	0	copy fasta	BTBD17	chr17	74351416	74366868
BTBD18_chr11_57738514_57756819	1/1	c0001	2139	336	82	68	132	14	38	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0002	2139	7	0	0	7	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0003	2139	2	2	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0004	2139	2	0	0	2	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0005	2139	1	1	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0006	2139	1	1	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0007	2139	1	0	0	1	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0008	2139	1	1	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0009	2139	1	0	0	1	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0010	2139	1	1	0	0	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD18_chr11_57738514_57756819	0/0	c0011	2139	1	0	0	1	0	0	copy fasta	BTBD18	chr11	57738514	57756819
BTBD19_chr1_44803523_44820585	1/1	c0001	876	429	97	71	195	18	46	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	c0002	876	1	1	0	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	c0003	876	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	c0004	876	1	0	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	c0005	876	1	0	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	c0006	876	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	c0007	876	1	0	0	1	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD19_chr1_44803523_44820585	0/0	c0008	876	1	0	1	0	0	0	copy fasta	BTBD19	chr1	44803523	44820585
BTBD1_chr15_83011423_83072252	1/1	c0001	1449	318	92	59	114	12	39	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	c0002	1449	4	3	1	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	c0003	1449	1	0	0	0	0	1	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	c0004	1449	1	1	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	c0005	1449	1	0	0	1	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	c0006	1449	1	0	0	1	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	c0007	1449	1	1	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD1_chr15_83011423_83072252	0/0	c0008	1449	1	1	0	0	0	0	copy fasta	BTBD1	chr15	83011423	83072252
BTBD2_chr19_1980448_2020714	0/1	c0001	1575	66	9	21	22	5	8	copy fasta	BTBD2	chr19	1980448	2020714