JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF474_chr5_122124546_122158569	0/0	c0023	1095	1	0	0	1	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0024	1095	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF474_chr5_122124546_122158569	0/0	c0025	1095	1	1	0	0	0	0	copy fasta	ZNF474	chr5	122124546	122158569
ZNF479_chr7_57112676_57137436	1/0	c0001	1575	188	60	34	64	8	21	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/1	c0002	1575	105	3	27	51	6	17	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0003	1575	45	0	1	44	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0004	1575	35	0	1	31	0	3	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0005	1575	12	6	4	0	0	2	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0006	1575	12	11	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0007	1575	4	4	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0008	1575	4	1	0	3	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0009	1575	3	2	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0010	1575	3	0	0	3	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0011	1575	2	2	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0012	1575	2	2	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0013	1575	2	2	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0014	1575	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0015	1575	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0016	1575	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0017	1575	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0018	1575	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0019	1575	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0020	1575	1	0	1	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0021	1559	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0022	1575	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0023	1575	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0024	1575	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0025	1575	1	0	0	0	0	1	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0026	1575	1	0	0	1	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0027	1575	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF479_chr7_57112676_57137436	0/0	c0028	1575	1	1	0	0	0	0	copy fasta	ZNF479	chr7	57112676	57137436
ZNF480_chr19_52292169_52330922	1/0	c0001	1608	135	43	32	43	4	12	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0002	1606	101	18	26	39	5	13	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0003	1606	59	0	8	41	2	8	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/1	c0004	1606	56	11	11	29	1	3	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0005	1608	18	18	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0006	1608	2	2	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0007	1608	2	0	0	2	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0008	1606	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0009	1606	1	0	0	1	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0010	1606	1	0	0	1	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0011	1606	1	0	1	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF480_chr19_52292169_52330922	0/0	c0012	1608	1	1	0	0	0	0	copy fasta	ZNF480	chr19	52292169	52330922
ZNF483_chr9_111520179_111560417	1/1	c0001	2235	400	92	56	190	16	44	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	c0002	2235	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF483_chr9_111520179_111560417	0/0	c0003	2235	1	0	0	1	0	0	copy fasta	ZNF483	chr9	111520179	111560417
ZNF484_chr9_92839182_92883038	1/1	c0001	2559	336	80	57	145	14	38	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0002	2559	56	1	1	52	0	2	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0003	2559	2	0	0	1	0	1	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0004	2559	1	0	1	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038