JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF484_chr9_92839182_92883038	0/0	c0005	2559	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0006	2559	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0007	2559	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0008	2559	1	0	0	0	0	1	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0009	2559	1	0	1	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0010	2559	1	1	0	0	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF484_chr9_92839182_92883038	0/0	c0011	2559	1	0	0	1	0	0	copy fasta	ZNF484	chr9	92839182	92883038
ZNF485_chr10_43601438_43622904	1/0	c0001	1326	305	39	53	175	8	29	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0002	1326	39	22	13	1	3	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0003	1326	33	10	3	14	1	5	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0004	1326	15	13	2	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0005	1326	9	4	3	0	1	1	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0006	1326	9	3	3	0	0	3	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0007	1326	8	1	0	0	0	7	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0008	1326	7	1	0	3	2	1	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/1	c0009	1326	5	0	1	0	1	2	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0010	1326	4	0	0	4	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0011	1326	3	2	1	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0012	1326	2	2	0	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0013	1326	1	1	0	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0014	1326	1	0	1	0	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF485_chr10_43601438_43622904	0/0	c0015	1326	1	0	0	1	0	0	copy fasta	ZNF485	chr10	43601438	43622904
ZNF486_chr19_20162214_20205488	1/0	c0001	1392	324	45	63	160	11	44	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0002	1392	24	23	1	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0003	1392	19	13	4	0	0	2	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0004	1392	5	5	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0005	1392	2	0	0	2	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0006	1392	2	2	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0007	1392	1	0	0	0	0	1	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0008	1392	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0009	1392	1	1	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0010	1392	1	0	0	0	0	1	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/0	c0011	1392	1	0	0	0	1	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF486_chr19_20162214_20205488	0/1	c0012	1392	1	0	0	0	0	0	copy fasta	ZNF486	chr19	20162214	20205488
ZNF487_chr10_43432111_43488181	1/1	c0001	624	272	61	53	124	13	19	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	c0002	624	41	20	12	0	2	7	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	c0003	624	10	0	1	6	1	2	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	c0004	624	4	4	0	0	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	c0005	624	3	2	1	0	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF487_chr10_43432111_43488181	0/0	c0006	624	2	1	1	0	0	0	copy fasta	ZNF487	chr10	43432111	43488181
ZNF488_chr10_47360496_47389293	1/1	c0001	1023	224	45	43	96	11	27	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0002	1023	156	32	12	95	3	14	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0003	1023	33	13	4	13	1	2	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0004	1023	6	0	6	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0005	1023	5	0	0	5	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0006	1023	4	0	3	0	1	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0007	1023	2	0	0	2	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0008	1023	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0009	1023	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0010	1023	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293