JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF488_chr10_47360496_47389293	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0012	1023	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0013	1023	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0014	1023	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0015	1023	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0016	1023	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0017	1023	1	0	0	0	0	1	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0018	1023	1	0	0	1	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0019	1023	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0020	1023	1	0	1	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF488_chr10_47360496_47389293	0/0	c0021	1023	1	1	0	0	0	0	copy fasta	ZNF488	chr10	47360496	47389293
ZNF48_chr16_30390420_30405108	0/0	c0001	1857	210	37	49	100	9	15	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	1/1	c0002	1857	59	7	21	20	2	7	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0003	1857	36	1	3	13	2	17	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0004	1857	28	25	2	0	0	1	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0005	1857	6	6	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0006	1857	3	1	1	0	1	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0007	1857	3	3	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0008	1857	2	2	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0009	1857	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0010	1857	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0011	1857	1	0	1	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0012	1857	1	0	0	0	0	1	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0013	1857	1	0	0	1	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0014	1857	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0015	1857	1	0	1	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0016	1857	1	0	0	0	0	1	copy fasta	ZNF48	chr16	30390420	30405108
ZNF48_chr16_30390420_30405108	0/0	c0017	1857	1	1	0	0	0	0	copy fasta	ZNF48	chr16	30390420	30405108
ZNF490_chr19_12571100_12615813	1/0	c0001	1590	294	82	42	130	4	35	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/1	c0002	1590	55	3	19	16	9	7	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0003	1590	5	0	4	0	1	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0004	1590	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0005	1590	2	2	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0006	1590	2	1	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0007	1590	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0008	1590	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0009	1590	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0010	1590	1	0	0	1	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0011	1590	1	0	1	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF490_chr19_12571100_12615813	0/0	c0012	1590	1	1	0	0	0	0	copy fasta	ZNF490	chr19	12571100	12615813
ZNF491_chr19_11793523_11813503	1/1	c0001	1314	360	78	72	164	17	27	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0002	1314	16	0	3	13	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0003	1314	2	0	0	2	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0004	1314	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0005	1314	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0006	1314	2	2	0	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0007	1314	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0008	1314	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0009	1314	1	0	0	0	0	1	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0010	1314	1	0	0	1	0	0	copy fasta	ZNF491	chr19	11793523	11813503