JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF491_chr19_11793523_11813503	0/0	c0011	1314	1	0	1	0	0	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF491_chr19_11793523_11813503	0/0	c0012	1314	1	0	0	0	1	0	copy fasta	ZNF491	chr19	11793523	11813503
ZNF492_chr19_22629324_22672671	1/1	c0001	1596	217	51	41	91	9	23	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0002	1596	42	4	9	22	2	5	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0003	1596	34	1	9	23	1	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0004	1596	25	24	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0005	1596	22	1	1	20	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0006	1596	8	8	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0007	1596	3	2	1	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0008	1596	2	0	2	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0009	1596	2	2	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0010	1596	2	2	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0011	1596	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0012	1596	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0013	1596	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0014	1596	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0015	1596	1	1	0	0	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0016	1512	1	0	0	0	0	1	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0017	1596	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0018	1596	1	0	0	0	0	1	copy fasta	ZNF492	chr19	22629324	22672671
ZNF492_chr19_22629324_22672671	0/0	c0019	1596	1	0	0	1	0	0	copy fasta	ZNF492	chr19	22629324	22672671
ZNF493_chr19_21392133_21432577	0/0	c0001	2325	183	51	27	70	10	25	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	1/0	c0002	2325	124	29	24	56	4	10	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/1	c0003	2325	29	2	13	5	4	4	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0004	2325	7	0	0	7	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0005	2241	3	3	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0006	2325	2	0	0	2	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0007	2325	2	0	2	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0008	2325	2	0	0	2	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0009	2325	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0010	2241	1	0	0	0	0	1	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0011	2325	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0012	2325	1	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0013	2325	1	0	1	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0014	2325	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0015	2325	1	0	0	1	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF493_chr19_21392133_21432577	0/0	c0016	2325	1	1	0	0	0	0	copy fasta	ZNF493	chr19	21392133	21432577
ZNF496_chr1_247292415_247336867	1/1	c0001	1764	325	82	66	123	15	37	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0002	1764	7	0	0	7	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0003	1764	7	0	0	7	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0004	1764	2	0	1	0	0	1	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0005	1764	2	0	1	0	1	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0006	1764	2	0	0	0	0	2	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0007	1764	2	2	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0008	1764	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0009	1764	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0010	1764	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0011	1764	1	0	0	1	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF496_chr1_247292415_247336867	0/0	c0012	1764	1	1	0	0	0	0	copy fasta	ZNF496	chr1	247292415	247336867
ZNF497_chr19_58349357_58367751	1/0	c0001	1497	251	42	56	119	15	18	copy fasta	ZNF497	chr19	58349357	58367751