JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF497_chr19_58349357_58367751	0/0	c0002	1497	140	44	25	42	3	26	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0003	1497	3	2	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0004	1497	3	0	0	3	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0005	1497	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0006	1497	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0007	1497	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0008	1497	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0009	1497	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/1	c0010	1497	1	0	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0011	1497	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0012	1497	1	0	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0013	1497	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0014	1497	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0015	1497	1	1	0	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0016	1497	1	0	0	1	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF497_chr19_58349357_58367751	0/0	c0017	1497	1	0	1	0	0	0	copy fasta	ZNF497	chr19	58349357	58367751
ZNF500_chr16_4743239_4772162	0/0	c0001	1443	113	9	34	55	7	8	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0002	1443	95	9	15	53	6	12	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/1	c0003	1443	94	21	10	38	3	21	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0004	1443	66	22	16	24	2	2	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	1/0	c0005	1443	10	9	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0006	1443	7	7	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0007	1443	5	3	2	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0008	1443	2	0	1	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0009	1443	2	2	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0010	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0011	1443	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0012	1443	1	0	1	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0013	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0014	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0015	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0016	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0017	1443	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0018	1443	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0019	1443	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0020	1443	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0021	1443	1	0	0	0	0	1	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0022	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0023	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0024	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0025	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0026	1443	1	1	0	0	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF500_chr16_4743239_4772162	0/0	c0027	1443	1	0	0	1	0	0	copy fasta	ZNF500	chr16	4743239	4772162
ZNF501_chr3_44724635_44742083	0/1	c0001	816	245	57	54	93	12	28	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	1/0	c0002	816	96	32	18	25	4	16	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	c0003	816	7	7	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	c0004	776	1	0	0	1	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	c0005	816	1	1	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	c0006	816	1	0	0	1	0	0	copy fasta	ZNF501	chr3	44724635	44742083
ZNF501_chr3_44724635_44742083	0/0	c0007	816	1	1	0	0	0	0	copy fasta	ZNF501	chr3	44724635	44742083