Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF512B_chr20_63951704_63974930	0/0	c0026	2679	1	1	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	c0027	2679	1	1	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	c0028	2670	1	0	1	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512B_chr20_63951704_63974930	0/0	c0029	2679	1	1	0	0	0	0	copy fasta	ZNF512B	chr20	63951704	63974930
ZNF512_chr2_27578042_27628217	0/0	c0001	1704	212	34	37	112	8	21	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	1/1	c0002	1704	91	24	17	27	6	15	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	c0003	1704	24	20	4	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	c0004	1704	1	0	0	1	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	c0005	1704	1	0	0	1	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	c0006	1704	1	1	0	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	c0007	1704	1	1	0	0	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF512_chr2_27578042_27628217	0/0	c0008	1704	1	0	0	1	0	0	copy fasta	ZNF512	chr2	27578042	27628217
ZNF513_chr2_27372235_27385734	1/1	c0001	1626	343	69	64	152	12	44	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0002	1626	3	3	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0003	1626	3	3	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0004	1626	2	0	0	0	2	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0005	1626	2	2	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0006	1626	1	0	0	1	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0007	1626	1	0	0	1	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0008	1626	1	0	1	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0009	1626	1	1	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0010	1626	1	1	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0011	1626	1	0	1	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF513_chr2_27372235_27385734	0/0	c0012	1626	1	1	0	0	0	0	copy fasta	ZNF513	chr2	27372235	27385734
ZNF514_chr2_95140000_95164848	1/1	c0001	1203	355	89	66	147	14	37	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	c0002	1203	8	0	0	7	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	c0003	1203	1	0	0	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	c0004	1203	1	0	0	0	0	1	copy fasta	ZNF514	chr2	95140000	95164848
ZNF514_chr2_95140000_95164848	0/0	c0005	1203	1	1	0	0	0	0	copy fasta	ZNF514	chr2	95140000	95164848
ZNF516_chr18_76352682_76500242	1/1	c0001	3492	186	9	34	96	12	33	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0002	3492	38	8	6	18	0	6	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0003	3492	15	6	3	5	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0004	3492	11	8	1	2	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0005	3492	9	8	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0006	3492	7	7	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0007	3492	7	0	4	2	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0008	3492	5	0	0	5	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0009	3492	4	1	1	0	0	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0010	3492	3	1	0	0	0	2	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0011	3492	3	0	0	3	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0012	3492	3	2	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0013	3492	3	2	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0014	3492	2	2	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0015	3492	2	0	2	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0016	3492	2	2	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0017	3492	2	2	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0018	3492	2	0	2	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0019	3492	2	2	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0020	3492	2	0	2	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0021	3492	2	1	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242