Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF516_chr18_76352682_76500242	0/0	c0022	3492	2	2	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0023	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0024	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0025	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0026	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0027	3492	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0028	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0029	3492	1	0	0	0	1	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0030	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0031	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0032	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0033	3492	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0034	3492	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0035	3492	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0036	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0037	3492	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0038	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0039	3492	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0040	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0041	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0042	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0043	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0044	3492	1	0	1	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0045	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0046	3492	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0047	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0048	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0049	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0050	3492	1	0	0	1	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0051	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0052	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0053	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0054	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0055	3492	1	0	0	0	0	1	copy fasta	ZNF516	chr18	76352682	76500242
ZNF516_chr18_76352682_76500242	0/0	c0056	3492	1	1	0	0	0	0	copy fasta	ZNF516	chr18	76352682	76500242
ZNF517_chr8_144793913_144815084	0/1	c0001	1479	343	49	73	168	14	38	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0002	1479	17	16	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0003	1479	9	8	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0004	1479	8	7	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0005	1479	7	3	2	0	0	2	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0006	1479	5	5	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0007	1479	2	2	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	1/0	c0008	1479	2	0	0	0	0	1	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0009	1479	2	0	0	0	0	2	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0010	1493	2	0	0	2	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0011	1479	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0012	1479	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0013	1479	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0014	1468	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0015	1479	1	0	0	0	0	1	copy fasta	ZNF517	chr8	144793913	144815084