Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF517_chr8_144793913_144815084	0/0	c0016	1479	1	0	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0017	1479	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0018	1479	1	0	0	1	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0019	1479	1	0	1	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0020	1479	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF517_chr8_144793913_144815084	0/0	c0021	1479	1	1	0	0	0	0	copy fasta	ZNF517	chr8	144793913	144815084
ZNF518A_chr10_96125297_96168759	1/1	c0001	4452	217	51	59	69	14	22	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0002	4452	53	0	1	46	0	6	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0003	4452	44	9	0	32	0	3	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0004	4452	27	23	3	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0005	4452	18	0	6	6	1	5	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0006	4452	5	0	0	5	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0007	4452	5	1	2	0	1	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0008	4452	4	1	3	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0009	4452	3	3	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0010	4452	2	0	2	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0011	4452	2	2	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0012	4452	2	0	0	0	0	2	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0013	4452	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0014	4452	1	0	1	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0015	4452	1	1	0	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0016	4452	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0017	4452	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0018	4452	1	0	1	0	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0019	4452	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0020	4452	1	0	0	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0021	4452	1	0	0	1	0	0	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0022	4452	1	0	0	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0023	4452	1	0	0	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518A_chr10_96125297_96168759	0/0	c0024	4452	1	0	0	0	0	1	copy fasta	ZNF518A	chr10	96125297	96168759
ZNF518B_chr4_10434880_10462426	0/1	c0001	3225	236	44	43	116	10	22	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0002	3225	90	8	23	44	5	10	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0003	3225	61	21	1	35	0	4	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0004	3225	9	3	4	1	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0005	3225	6	6	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0006	3225	4	4	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	1/0	c0007	3225	4	3	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0008	3225	3	0	1	0	0	2	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0009	3225	3	0	0	3	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0010	3225	3	2	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0011	3225	2	0	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0012	3225	2	0	0	2	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0013	3225	2	0	1	0	0	1	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0014	3225	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0015	3225	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0016	3225	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0017	3225	1	0	1	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0018	3225	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0019	3225	1	1	0	0	0	0	copy fasta	ZNF518B	chr4	10434880	10462426
ZNF518B_chr4_10434880_10462426	0/0	c0020	3225	1	0	0	0	1	0	copy fasta	ZNF518B	chr4	10434880	10462426