JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BTBD2_chr19_1980448_2020714	0/0	c0002	1566	44	2	8	27	3	4	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0003	1575	41	11	8	14	3	5	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0004	1572	38	19	7	7	0	5	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0005	1566	34	14	0	14	1	5	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0006	1572	33	8	8	14	1	2	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	1/0	c0007	1578	14	3	4	3	1	2	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0008	1566	13	1	4	7	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0009	1572	12	1	2	9	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0010	1569	11	6	1	2	0	2	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0011	1575	9	0	1	6	1	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0012	1578	7	3	0	4	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0013	1569	4	4	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0014	1572	4	3	1	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0015	1557	2	1	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0016	1566	2	0	0	1	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0017	1566	2	0	0	2	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0018	1569	2	0	2	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0019	1566	1	0	0	0	1	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0020	1560	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0021	1560	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0022	1567	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0023	1563	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0024	1567	1	0	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0025	1566	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0026	1566	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0027	1566	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0028	1566	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0029	1566	1	0	1	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0030	1590	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0031	1569	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0032	1569	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0033	1569	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0034	1569	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0035	1572	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0036	1575	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0037	1575	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0038	1575	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0039	1575	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0040	1575	1	0	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0041	1575	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0042	1575	1	0	0	0	0	1	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0043	1572	1	1	0	0	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD2_chr19_1980448_2020714	0/0	c0044	1572	1	0	0	1	0	0	copy fasta	BTBD2	chr19	1980448	2020714
BTBD3_chr20_11912893_11931595	1/1	c0001	1569	370	89	74	155	12	38	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0002	1569	59	3	7	47	0	2	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0003	1569	8	0	0	8	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0004	1569	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0005	1569	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0006	1569	1	1	0	0	0	0	copy fasta	BTBD3	chr20	11912893	11931595
BTBD3_chr20_11912893_11931595	0/0	c0007	1569	1	0	0	1	0	0	copy fasta	BTBD3	chr20	11912893	11931595