Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF534_chr19_52424148_52447499	0/0	c0015	1986	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0016	1986	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0017	1986	1	1	0	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0018	1986	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0019	1986	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0020	1986	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0021	1986	1	0	1	0	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0022	1986	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0023	1986	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF534_chr19_52424148_52447499	0/0	c0024	1986	1	0	0	1	0	0	copy fasta	ZNF534	chr19	52424148	52447499
ZNF536_chr19_30367384_30563059	1/1	c0001	3903	91	27	17	28	1	16	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0002	3903	79	28	20	23	1	7	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0003	3903	6	3	0	0	0	3	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0004	3903	5	5	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0005	3903	4	4	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0006	3903	3	1	1	1	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0007	3903	3	0	0	3	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0008	3903	2	2	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0009	3903	2	0	0	2	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0010	3903	2	0	0	2	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0011	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0012	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0013	3903	1	0	1	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0014	3903	1	0	1	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0015	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0016	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0017	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0018	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0019	3903	1	0	0	1	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0020	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0021	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0022	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0023	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0024	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF536_chr19_30367384_30563059	0/0	c0025	3903	1	1	0	0	0	0	copy fasta	ZNF536	chr19	30367384	30563059
ZNF540_chr19_37589876_37619179	1/1	c0001	1983	228	64	59	71	11	21	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0002	1983	110	27	10	63	1	9	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0003	1983	2	2	0	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0004	1983	1	0	1	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0005	2004	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0006	1983	1	1	0	0	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0007	1983	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0008	1967	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF540_chr19_37589876_37619179	0/0	c0009	1983	1	0	0	1	0	0	copy fasta	ZNF540	chr19	37589876	37619179
ZNF541_chr19_47515690_47578148	1/0	c0001	4041	176	49	39	55	10	22	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0002	4041	58	9	13	30	1	5	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0003	4041	19	1	5	11	0	2	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0004	4041	7	0	0	7	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0005	4041	5	3	2	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0006	4041	5	5	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148