Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF541_chr19_47515690_47578148	0/0	c0007	4041	5	5	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0008	4041	2	2	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0009	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0010	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0011	4041	1	0	0	0	0	1	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0012	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0013	4041	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0014	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0015	4041	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0016	4041	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0017	4041	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0018	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0019	4041	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0020	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0021	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0022	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0023	4041	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/1	c0024	4041	1	0	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0025	4041	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0026	4041	1	0	0	1	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0027	4023	1	1	0	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0028	4041	1	0	1	0	0	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF541_chr19_47515690_47578148	0/0	c0029	4041	1	0	0	0	1	0	copy fasta	ZNF541	chr19	47515690	47578148
ZNF543_chr19_57315472_57335770	1/0	c0001	1803	143	15	31	68	8	20	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/1	c0002	1803	116	14	21	62	4	14	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0003	1803	74	19	9	44	0	2	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0004	1803	58	29	15	9	3	2	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0005	1803	21	2	4	9	1	5	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0006	1803	16	0	0	16	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0007	1803	9	8	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0008	1803	3	3	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0009	1803	3	3	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0010	1803	3	0	0	3	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0011	1803	2	0	0	2	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0012	1803	2	0	1	0	0	1	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0013	1803	2	2	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0014	1803	2	0	0	2	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0015	1803	1	0	0	1	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0016	1803	1	0	0	0	1	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0017	1803	1	0	0	0	1	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0018	1803	1	0	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0019	1803	1	0	1	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF543_chr19_57315472_57335770	0/0	c0020	1803	1	1	0	0	0	0	copy fasta	ZNF543	chr19	57315472	57335770
ZNF544_chr19_58223914_58268644	0/1	c0001	2148	196	35	43	83	11	23	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	1/0	c0002	2148	148	38	21	68	3	17	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0003	2148	35	14	10	8	0	3	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0004	2148	5	5	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0005	2148	2	0	1	0	1	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0006	2148	1	0	0	0	1	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0007	2148	1	0	0	1	0	0	copy fasta	ZNF544	chr19	58223914	58268644