Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ZNF544_chr19_58223914_58268644	0/0	c0008	2148	1	0	0	0	0	1	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0009	2148	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0010	2148	1	0	0	1	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0011	2148	1	0	0	1	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0012	2148	1	0	1	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF544_chr19_58223914_58268644	0/0	c0013	2148	1	1	0	0	0	0	copy fasta	ZNF544	chr19	58223914	58268644
ZNF546_chr19_39992060_40026038	1/1	c0001	2511	168	62	36	57	3	8	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0002	2511	49	10	5	30	0	4	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0003	2511	6	6	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0004	2511	4	4	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0005	2511	3	0	0	3	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0006	2511	3	3	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0007	2511	3	2	1	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0008	2511	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0009	2511	1	0	0	1	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0010	2511	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0011	2511	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0012	2511	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0013	2511	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0014	2511	1	1	0	0	0	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF546_chr19_39992060_40026038	0/0	c0015	2511	1	0	0	0	1	0	copy fasta	ZNF546	chr19	39992060	40026038
ZNF547_chr19_57358551_57384565	1/1	c0001	1209	371	72	63	177	16	41	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0002	1209	9	8	1	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0003	1209	8	0	0	8	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0004	1209	6	6	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0005	1209	4	4	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0006	1209	1	1	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0007	1209	1	1	0	0	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0008	1209	1	0	0	1	0	0	copy fasta	ZNF547	chr19	57358551	57384565
ZNF547_chr19_57358551_57384565	0/0	c0009	1209	1	0	0	0	0	1	copy fasta	ZNF547	chr19	57358551	57384565
ZNF548_chr19_57384854_57407992	0/0	c0001	1638	309	60	61	145	13	30	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	1/1	c0002	1638	61	2	5	47	2	3	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0003	1638	22	1	3	10	1	7	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0004	1638	20	18	2	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0005	1638	4	3	1	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0006	1638	2	2	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0007	1638	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0008	1638	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0009	1638	1	0	0	0	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0010	1638	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0011	1638	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0012	1638	1	1	0	0	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0013	1638	1	0	0	0	0	1	copy fasta	ZNF548	chr19	57384854	57407992
ZNF548_chr19_57384854_57407992	0/0	c0014	1638	1	0	0	1	0	0	copy fasta	ZNF548	chr19	57384854	57407992
ZNF549_chr19_57522356_57545876	0/1	c0001	1923	335	74	66	149	15	30	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0002	1923	12	5	0	4	0	3	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0003	1923	12	0	0	12	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0004	1923	11	11	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	1/0	c0005	1923	7	0	3	0	1	2	copy fasta	ZNF549	chr19	57522356	57545876
ZNF549_chr19_57522356_57545876	0/0	c0006	1923	4	4	0	0	0	0	copy fasta	ZNF549	chr19	57522356	57545876